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The map label for this gene is RpiR4 [C]

Identifier: 20808780

GI number: 20808780

Start: 2311532

End: 2312389

Strand: Reverse

Name: RpiR4 [C]

Synonym: TTE2419

Alternate gene names: 20808780

Gene position: 2312389-2311532 (Counterclockwise)

Preceding gene: 20808781

Following gene: 20808779

Centisome position: 85.98

GC content: 36.83

Gene sequence:

>858_bases
ATGTCAGAGCAAAATAATGGCAATGTAATATTAAAAATACAAAGTATATATAACTCTCTCACAAATGCGGAGAAAAAAGT
GGCAGATTATGTGCTGGAAAATGCTGAAAGCGTTATATACCTTTCGATTACAGAATTGGCTGAAAAATGTGGTACAGGGG
AAACAACTATTGTAAGGTTTTGCAGACGTATAGGACTTTCGGGCTTTCAGGAATTCAAGTTAAACCTTGCCAAAGAAATT
GCCGAGCCAGAGACAAGCATACATGAAAACATTTCATTTAATGATCCTCTTGATGTATTAGTACAGAAAATAACTACAGA
AAATACCTTGGCTATTTCTAATACAGTCAAACTGCTTTCAATGAGCGAACTGGAAAAAGCAGTTGATGCAATAATTAATG
CCAGAAAAATTCAGTTTTATGGTGTAGGAGCATCTGGCTATACAGCATTAGATGCTAAATACAAATTTATGAGGCTTGGA
TTAAACGTAGATGCCAATCTAGATGCACATATTCAGGCTATTTCTGCGGTAAGTCTTACAGATAAAGATGTAGCTGTAGG
CATATCTTTTTCAGGGAGCACGAAAGATACAGTTGAGACTTGTAGATTGGCAAAAGAAGCTGGTGCCAGGGTGATCGCTA
TAACGAATTATGCTAGATCTCCAATTACTTCCGTTGCAGATATTGTCTTACTTACTTCTGCAAAAGAAACCCCGTTGCGA
AGTGGTGCTTTAACCTCAAAAATAGCACAGCTTCATATTCTAGATATTTTGTATACTGCAGTGGCAGTAAAGCTTAAGGA
CAAAGCCGTACAGGAGCTTAATAAGACTGCAAAAGCTGTTTTAGAAAAATTGTACTAG

Upstream 100 bases:

>100_bases
GAAAAAGGAGCGTATGCAGTTGTTGTAGGTACTGCTATTACCCGTCCTCATGAGATCACAAGAAGGTTTGTGACTTTCAT
TAAGGAGAGGAGATATTCAA

Downstream 100 bases:

>100_bases
GTGATTGTATATGAAAGTAATAGGTGTTGATATAGGTGGTACAAAAATACTTGGGGGCTTGATTGACGAAAGAGGAAACT
TATTGGAAGAGACTTTAGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSEQNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLSGFQEFKLNLAKEI
AEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLG
LNVDANLDAHIQAISAVSLTDKDVAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLR
SGALTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEKLY

Sequences:

>Translated_285_residues
MSEQNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLSGFQEFKLNLAKEI
AEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLG
LNVDANLDAHIQAISAVSLTDKDVAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLR
SGALTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEKLY
>Mature_284_residues
SEQNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRFCRRIGLSGFQEFKLNLAKEIA
EPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLSMSELEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLGL
NVDANLDAHIQAISAVSLTDKDVAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLRS
GALTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEKLY

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=263, Percent_Identity=31.9391634980989, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788159, Length=278, Percent_Identity=32.0143884892086, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI87082130, Length=258, Percent_Identity=29.8449612403101, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87082369, Length=244, Percent_Identity=30.327868852459, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30977; Mature: 30846

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRF
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHHHHHH
CRRIGLSGFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLS
HHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHH
MSELEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLT
HHHHHHHHHHHHCCCEEEEEEECCCCCEEHHCCEEEEEECCCCCCCCCHHHHHHHHEEEC
DKDVAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLR
CCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHEECCCCCCCC
SGALTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEKLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEQNNGNVILKIQSIYNSLTNAEKKVADYVLENAESVIYLSITELAEKCGTGETTIVRF
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHHHHHH
CRRIGLSGFQEFKLNLAKEIAEPETSIHENISFNDPLDVLVQKITTENTLAISNTVKLLS
HHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHH
MSELEKAVDAIINARKIQFYGVGASGYTALDAKYKFMRLGLNVDANLDAHIQAISAVSLT
HHHHHHHHHHHHCCCEEEEEEECCCCCEEHHCCEEEEEECCCCCCCCCHHHHHHHHEEEC
DKDVAVGISFSGSTKDTVETCRLAKEAGARVIAITNYARSPITSVADIVLLTSAKETPLR
CCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHEECCCCCCCC
SGALTSKIAQLHILDILYTAVAVKLKDKAVQELNKTAKAVLEKLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]