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The map label for this gene is secY [H]

Identifier: 20808641

GI number: 20808641

Start: 2165992

End: 2167248

Strand: Reverse

Name: secY [H]

Synonym: TTE2272

Alternate gene names: 20808641

Gene position: 2167248-2165992 (Counterclockwise)

Preceding gene: 20808642

Following gene: 20808640

Centisome position: 80.58

GC content: 40.25

Gene sequence:

>1257_bases
GTGTTTCAAACTCTTGTAAATGCTTGGAAAGTTGATGATATAAGAAGGAGAATACTCTATACACTAGGAATGCTGGTGAT
ATTTAGACTAGGGTCTCACATTCCTGTGCCGGGGATTGACCCTAAGCAGATTGCCAATATTTTGGGGCAGGGGCAGCTGT
TTGGTTTTTTTGACATAATCTCTGGCGGTGCTTTCCGCAATTTTACGATTTTCGCGATGAGCATTGTGCCCTACATTAAT
GCCTCAATTATAATGCAGCTTTTGACAATTGCCATTCCTTCCCTTGAGCAATTGGCGAAAGAAGGGGAGGAAGGTAGAAA
AAAGATTGCACAGTATACTAGGTACTTGACGGTTGTTTTAGCTCTTATACAGGCGATAGGAATGACGATAGGACTAAGAA
GTGCGGTCATAAATCCTACTTTCTTCAGATTAACAGTAATTGTCATAACCCTTACAGCAGGTACTACTTTCTTGATGTGG
CTAGGTGAGAGAATCACGGAAAACGGCTTGGGTAACGGAAGCTCTTTGATAATTTTTGCAGGGATAATCTCCAGGATTCC
GAACATGATATATTTAACACACGAGTACATTAAAGCTGGAACTTCCAACATATTTGGCGCGATTGCATTTGTAGTGGCAG
AGCTTATCATGATAGTGCTTATAATTTTGGCAACAGAAGGGCAAAGGCGAATACCAGTTCAATACGCTAAAAGAGTTGTA
GGTAGGAGAGTGTACGGGGGACAGAGCACACACATTCCTATAAGGATAAACATGGCAGGCGTTATCCCGATTATATTTGC
AATTTCCTTGTTGCAATTTCCACAGCAGTTAGCGACATTTTTCCCGCATTCTTCTTTCTACAATTTTGTTCAGAAATGGC
TAAGCACAAATGGGCTCATATACAACCTTTTAGATATATTCTTGATAATAGGTTTTACCTATTTTTACACAGCAGTCATA
TTTAACCCGCAGGATATTTCTGATAACTTGAAAAAATACGGAGGCTTTATTCCAGGCATAAGACCTGGCAAACCGACTAC
CGAGTATCTGACCAAAGTTTTAAATAGAATCGTATTTGTAGGGGCATTGTTCCTAGCGTTTATTGCCACAATGCCAGTGG
TTTTGATGAATGTGACAGGATTGCAGCTTTACTTTGGAGGCACGGCTTTATTGATAGCAGTAGGTGTGGCTTTAGATACC
ATGAAGCAAATAGAAGGTCACCTGATTATGAGAAATTATCAGGGATTCTTGAAGTAA

Upstream 100 bases:

>100_bases
GGGGAGCTTACCAAGAAGTTGACTGTCAAGGCCCATAAATTCAGTCAAAGCGCCGTGGAAAAGATTCAAGCCGTTGGGGG
AAAGGCAGAGGTGATATAGA

Downstream 100 bases:

>100_bases
AGGGGGAGAAATTATGCGGGTGGTGCTTCTGGGCCCCCCTGGTGCCGGAAAAGGGACCCAAGCGCTTAAAATTGCTAAGG
AGTTTGACATTCCTCACATA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MFQTLVNAWKVDDIRRRILYTLGMLVIFRLGSHIPVPGIDPKQIANILGQGQLFGFFDIISGGAFRNFTIFAMSIVPYIN
ASIIMQLLTIAIPSLEQLAKEGEEGRKKIAQYTRYLTVVLALIQAIGMTIGLRSAVINPTFFRLTVIVITLTAGTTFLMW
LGERITENGLGNGSSLIIFAGIISRIPNMIYLTHEYIKAGTSNIFGAIAFVVAELIMIVLIILATEGQRRIPVQYAKRVV
GRRVYGGQSTHIPIRINMAGVIPIIFAISLLQFPQQLATFFPHSSFYNFVQKWLSTNGLIYNLLDIFLIIGFTYFYTAVI
FNPQDISDNLKKYGGFIPGIRPGKPTTEYLTKVLNRIVFVGALFLAFIATMPVVLMNVTGLQLYFGGTALLIAVGVALDT
MKQIEGHLIMRNYQGFLK

Sequences:

>Translated_418_residues
MFQTLVNAWKVDDIRRRILYTLGMLVIFRLGSHIPVPGIDPKQIANILGQGQLFGFFDIISGGAFRNFTIFAMSIVPYIN
ASIIMQLLTIAIPSLEQLAKEGEEGRKKIAQYTRYLTVVLALIQAIGMTIGLRSAVINPTFFRLTVIVITLTAGTTFLMW
LGERITENGLGNGSSLIIFAGIISRIPNMIYLTHEYIKAGTSNIFGAIAFVVAELIMIVLIILATEGQRRIPVQYAKRVV
GRRVYGGQSTHIPIRINMAGVIPIIFAISLLQFPQQLATFFPHSSFYNFVQKWLSTNGLIYNLLDIFLIIGFTYFYTAVI
FNPQDISDNLKKYGGFIPGIRPGKPTTEYLTKVLNRIVFVGALFLAFIATMPVVLMNVTGLQLYFGGTALLIAVGVALDT
MKQIEGHLIMRNYQGFLK
>Mature_418_residues
MFQTLVNAWKVDDIRRRILYTLGMLVIFRLGSHIPVPGIDPKQIANILGQGQLFGFFDIISGGAFRNFTIFAMSIVPYIN
ASIIMQLLTIAIPSLEQLAKEGEEGRKKIAQYTRYLTVVLALIQAIGMTIGLRSAVINPTFFRLTVIVITLTAGTTFLMW
LGERITENGLGNGSSLIIFAGIISRIPNMIYLTHEYIKAGTSNIFGAIAFVVAELIMIVLIILATEGQRRIPVQYAKRVV
GRRVYGGQSTHIPIRINMAGVIPIIFAISLLQFPQQLATFFPHSSFYNFVQKWLSTNGLIYNLLDIFLIIGFTYFYTAVI
FNPQDISDNLKKYGGFIPGIRPGKPTTEYLTKVLNRIVFVGALFLAFIATMPVVLMNVTGLQLYFGGTALLIAVGVALDT
MKQIEGHLIMRNYQGFLK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=421, Percent_Identity=45.8432304038005, Blast_Score=342, Evalue=2e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46492; Mature: 46492

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQTLVNAWKVDDIRRRILYTLGMLVIFRLGSHIPVPGIDPKQIANILGQGQLFGFFDII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
SGGAFRNFTIFAMSIVPYINASIIMQLLTIAIPSLEQLAKEGEEGRKKIAQYTRYLTVVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
ALIQAIGMTIGLRSAVINPTFFRLTVIVITLTAGTTFLMWLGERITENGLGNGSSLIIFA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHH
GIISRIPNMIYLTHEYIKAGTSNIFGAIAFVVAELIMIVLIILATEGQRRIPVQYAKRVV
HHHHHCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
GRRVYGGQSTHIPIRINMAGVIPIIFAISLLQFPQQLATFFPHSSFYNFVQKWLSTNGLI
HHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH
YNLLDIFLIIGFTYFYTAVIFNPQDISDNLKKYGGFIPGIRPGKPTTEYLTKVLNRIVFV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GALFLAFIATMPVVLMNVTGLQLYFGGTALLIAVGVALDTMKQIEGHLIMRNYQGFLK
HHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHCC
>Mature Secondary Structure
MFQTLVNAWKVDDIRRRILYTLGMLVIFRLGSHIPVPGIDPKQIANILGQGQLFGFFDII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
SGGAFRNFTIFAMSIVPYINASIIMQLLTIAIPSLEQLAKEGEEGRKKIAQYTRYLTVVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
ALIQAIGMTIGLRSAVINPTFFRLTVIVITLTAGTTFLMWLGERITENGLGNGSSLIIFA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHH
GIISRIPNMIYLTHEYIKAGTSNIFGAIAFVVAELIMIVLIILATEGQRRIPVQYAKRVV
HHHHHCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
GRRVYGGQSTHIPIRINMAGVIPIIFAISLLQFPQQLATFFPHSSFYNFVQKWLSTNGLI
HHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH
YNLLDIFLIIGFTYFYTAVIFNPQDISDNLKKYGGFIPGIRPGKPTTEYLTKVLNRIVFV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GALFLAFIATMPVVLMNVTGLQLYFGGTALLIAVGVALDTMKQIEGHLIMRNYQGFLK
HHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA