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The map label for this gene is ygaF [C]

Identifier: 20808404

GI number: 20808404

Start: 1949575

End: 1951071

Strand: Reverse

Name: ygaF [C]

Synonym: TTE2001

Alternate gene names: 20808404

Gene position: 1951071-1949575 (Counterclockwise)

Preceding gene: 20808405

Following gene: 20808403

Centisome position: 72.55

GC content: 41.15

Gene sequence:

>1497_bases
ATGGTGTACGATGTTTTAATAGTAGGTGCCGGTGTGGTAGGATGCTCTATTGCAAGAGAGCTTTCTAAATATAAATTAAA
AGTGATTGTGGTGGAAAAAGGAGAAGACGCAGCTTCAGAAGGGGCATCAAAAGCTAACAGCGCAATACTTCACGCAGGGT
ATGACCCGGTTCCAGGGACTTTGAAAGCAAAGCTCAATGTCCGTGGGAATGAAATGTTTGAAGAACTGTGCAAAGACCTG
GACGTTCCTATGAAAAGGACTGGTTCTTTAGTGGTGGCTTTTTCAGAAGAGGAAATTAAAGAGCTTTACAAGCTATTTGA
CAGAGGCATAAAGAATGGAGTAAAAGAGCTCTCCATAATTACAAAGGACATGGTAAAGGAAATTGAACCGTATATAAATG
ACAATGTCATAGCTGCTCTATACGCCAAAAAGGCTGGAATTATTTCTCCTTATGTTTTCACTATTGCTCTGGCGGAAAAT
GCTGCCCAAAACGGGGTAGAGTTTTCTTTTAATTCGGAGGTAGTAGATATTAAGAGAAAGGAGGATGTATTTGTCGTAAA
GACGCCTTCAAAGGAGTTTTATGCAAGGTATGTGGTCAATGCAGCTGGAGTTTATTCTGATGTGATAAACAATATGGTGG
GAGCAAAACCTTTCTCTGTGCATCCAAGAAAAGGTGAGTATCTGATACTTGACAAAGATCAAGGCTATATTGCCAGGACT
GTGATATTCCAGGTGCCGACAAAGATGGGAAAAGGTATTCTGGTATCACCCACCATTGACGGCAATTTGCTTATAGGACC
TACTTCAGAAGACATACAGGATAAGGAATTTAAAGCGACTACGAGGGAAGGACTTAATAAAGCCATTACTGTTGCTAAAA
GAAGTGTGGATAAATTTGACGTTCGAAAGACAATAACGCAGTTTACAGGTTTAAGAGCTACTCCTGACACGGAGGAGAAG
GATTTTATCATAGGAGAATCGGATGTGAAAGGATTTATAAATGTGGCTGGAATAGAATCCCCTGGTTTTACAGCAGCACC
TGCAATTGCGGAAATGGTGAGAGATATATTAAAAGACGCAGGTCTTGAGCTTGTTGAAAAGGACGATTTTAACCCAAAGA
GGAAACCTGTTATAAGGTTTGTAGAGCTTTCTGATGAAGAGAAAAATAGGCTCATTAAAGAAAATCCTGCCTATGGAAGG
ATAGTATGCAGGTGTGAGACGGTGACAGAAGGAGAAGTTATAGATGCAATAAGAAGACCTGTTGGAGCGAAATCGGTGGA
CGGGGTAAAAAGGCGCGTAAGAGCAGGCATGGGCAGGTGTCAGGGAAGTTTCTGTGGTCCCAGGATAGTAGAGATACTTG
CAAGAGAGCTTAACATTTCTCCTCTTGAAGTTACAAAGCATGGCAGGAATTCTTACATTCTTGCCGGTGAGACAAAGAAG
TTTTTATTAGACAAGGCTTCAGAGCTTTTGAAGAAAGAGGTGTATGGCAATGCTTAA

Upstream 100 bases:

>100_bases
AAAAATAAATAATAGGTATGGTGGAGATTGGGAGAACCATATATAGCCGAGATGCCTCGGTTATATATGGTTTTTTATCT
TCTTAAGGAGGTTTTAAAAG

Downstream 100 bases:

>100_bases
CTATGATATAGTCATAATAGGAGGAGGACCTGCAGGCTTAGGTGCTGCTGTAGAAGCCTATGAAAAGGGAGTAAAAAATG
TCGTGATATTGGAAAGAGAT

Product: dehydrogenase

Products: glycerone phosphate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MVYDVLIVGAGVVGCSIARELSKYKLKVIVVEKGEDAASEGASKANSAILHAGYDPVPGTLKAKLNVRGNEMFEELCKDL
DVPMKRTGSLVVAFSEEEIKELYKLFDRGIKNGVKELSIITKDMVKEIEPYINDNVIAALYAKKAGIISPYVFTIALAEN
AAQNGVEFSFNSEVVDIKRKEDVFVVKTPSKEFYARYVVNAAGVYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYIART
VIFQVPTKMGKGILVSPTIDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFDVRKTITQFTGLRATPDTEEK
DFIIGESDVKGFINVAGIESPGFTAAPAIAEMVRDILKDAGLELVEKDDFNPKRKPVIRFVELSDEEKNRLIKENPAYGR
IVCRCETVTEGEVIDAIRRPVGAKSVDGVKRRVRAGMGRCQGSFCGPRIVEILARELNISPLEVTKHGRNSYILAGETKK
FLLDKASELLKKEVYGNA

Sequences:

>Translated_498_residues
MVYDVLIVGAGVVGCSIARELSKYKLKVIVVEKGEDAASEGASKANSAILHAGYDPVPGTLKAKLNVRGNEMFEELCKDL
DVPMKRTGSLVVAFSEEEIKELYKLFDRGIKNGVKELSIITKDMVKEIEPYINDNVIAALYAKKAGIISPYVFTIALAEN
AAQNGVEFSFNSEVVDIKRKEDVFVVKTPSKEFYARYVVNAAGVYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYIART
VIFQVPTKMGKGILVSPTIDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFDVRKTITQFTGLRATPDTEEK
DFIIGESDVKGFINVAGIESPGFTAAPAIAEMVRDILKDAGLELVEKDDFNPKRKPVIRFVELSDEEKNRLIKENPAYGR
IVCRCETVTEGEVIDAIRRPVGAKSVDGVKRRVRAGMGRCQGSFCGPRIVEILARELNISPLEVTKHGRNSYILAGETKK
FLLDKASELLKKEVYGNA
>Mature_498_residues
MVYDVLIVGAGVVGCSIARELSKYKLKVIVVEKGEDAASEGASKANSAILHAGYDPVPGTLKAKLNVRGNEMFEELCKDL
DVPMKRTGSLVVAFSEEEIKELYKLFDRGIKNGVKELSIITKDMVKEIEPYINDNVIAALYAKKAGIISPYVFTIALAEN
AAQNGVEFSFNSEVVDIKRKEDVFVVKTPSKEFYARYVVNAAGVYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYIART
VIFQVPTKMGKGILVSPTIDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFDVRKTITQFTGLRATPDTEEK
DFIIGESDVKGFINVAGIESPGFTAAPAIAEMVRDILKDAGLELVEKDDFNPKRKPVIRFVELSDEEKNRLIKENPAYGR
IVCRCETVTEGEVIDAIRRPVGAKSVDGVKRRVRAGMGRCQGSFCGPRIVEILARELNISPLEVTKHGRNSYILAGETKK
FLLDKASELLKKEVYGNA

Specific function: Unknown

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI13376331, Length=281, Percent_Identity=29.1814946619217, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI24797151, Length=226, Percent_Identity=28.7610619469027, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI87082148, Length=247, Percent_Identity=27.1255060728745, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788574, Length=483, Percent_Identity=24.0165631469979, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17565764, Length=278, Percent_Identity=32.0143884892086, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24585081, Length=278, Percent_Identity=33.0935251798561, Blast_Score=115, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.1.99.5

Molecular weight: Translated: 54826; Mature: 54826

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYDVLIVGAGVVGCSIARELSKYKLKVIVVEKGEDAASEGASKANSAILHAGYDPVPGT
CEEEEEEECCCHHHHHHHHHHHHCEEEEEEEECCCCHHHHCCHHHCCEEEECCCCCCCCC
LKAKLNVRGNEMFEELCKDLDVPMKRTGSLVVAFSEEEIKELYKLFDRGIKNGVKELSII
EEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
TKDMVKEIEPYINDNVIAALYAKKAGIISPYVFTIALAENAAQNGVEFSFNSEVVDIKRK
HHHHHHHHHHHCCCCEEEEEHHHHCCCCCCHHHEEEHHHHHHCCCCEEEECCCEEEEECC
EDVFVVKTPSKEFYARYVVNAAGVYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYIART
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEH
VIFQVPTKMGKGILVSPTIDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFD
HHHHCHHHHCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKTITQFTGLRATPDTEEKDFIIGESDVKGFINVAGIESPGFTAAPAIAEMVRDILKDA
HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
GLELVEKDDFNPKRKPVIRFVELSDEEKNRLIKENPAYGRIVCRCETVTEGEVIDAIRRP
CCEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCC
VGAKSVDGVKRRVRAGMGRCQGSFCGPRIVEILARELNISPLEVTKHGRNSYILAGETKK
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEECCHHH
FLLDKASELLKKEVYGNA
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVYDVLIVGAGVVGCSIARELSKYKLKVIVVEKGEDAASEGASKANSAILHAGYDPVPGT
CEEEEEEECCCHHHHHHHHHHHHCEEEEEEEECCCCHHHHCCHHHCCEEEECCCCCCCCC
LKAKLNVRGNEMFEELCKDLDVPMKRTGSLVVAFSEEEIKELYKLFDRGIKNGVKELSII
EEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
TKDMVKEIEPYINDNVIAALYAKKAGIISPYVFTIALAENAAQNGVEFSFNSEVVDIKRK
HHHHHHHHHHHCCCCEEEEEHHHHCCCCCCHHHEEEHHHHHHCCCCEEEECCCEEEEECC
EDVFVVKTPSKEFYARYVVNAAGVYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYIART
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEH
VIFQVPTKMGKGILVSPTIDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFD
HHHHCHHHHCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKTITQFTGLRATPDTEEKDFIIGESDVKGFINVAGIESPGFTAAPAIAEMVRDILKDA
HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
GLELVEKDDFNPKRKPVIRFVELSDEEKNRLIKENPAYGRIVCRCETVTEGEVIDAIRRP
CCEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCC
VGAKSVDGVKRRVRAGMGRCQGSFCGPRIVEILARELNISPLEVTKHGRNSYILAGETKK
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEECCHHH
FLLDKASELLKKEVYGNA
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: sn-glycerol 3-phosphate; acceptor

Specific reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]