Click here to switch to the map view.

The map label for this gene is whiA

Identifier: 20808238

GI number: 20808238

Start: 1771037

End: 1771993

Strand: Reverse

Name: whiA

Synonym: TTE1821

Alternate gene names: 20808238

Gene position: 1771993-1771037 (Counterclockwise)

Preceding gene: 20808239

Following gene: 20808237

Centisome position: 65.89

GC content: 34.59

Gene sequence:

>957_bases
ATGTCTTTTTCTTCAGATACAAAAAACGAATTATCAAGAATTTATCCTGAGGATAGGGAAAGCAAAATTGCAGAGTTGGC
TGCTATAATTAGAATGATAGGAAGTGTATCATTTTATGGAAATAATAAACTATCTCTTACTTTGAGCACAGAAAATGCTT
CAGTGGCTCGCTTAACTTTTAAACTTTTAAAAGACCTTTTTAAAGTAGCACCTGAGGTAATGGTAAGGAGAGGGAAATAT
TTAAAAAAGGCATTGACATATATTTTGTTTGTGAGTGACACCAAAGCTGTGAGAGATATTTTAGAAGAGACTAAGATATT
GAATAGAGAAAGAGGACATGTAAAATTGAACTATGGAATAGATAGAAAAATTATAAGGACTGTGAAGATGAAAAAAGCTT
ATTTAAGAGGAGCTTTTTTGGGAGGTGGTTCAATTAGTGACCCTGAAAAAGCCTATCATTTGGAATTTGTGACTCACAAC
CTTGAACACGGGCAGGATTTGAGCAATTTGATTAATTCTTTTAATTTGAATTCCAAGGTTATTGCAAGAAAAAATAGTTA
TGTAGTATACTTAAAAGAAGGAGAACAGATTGTAGACCTTTTGAACATAATGGGGGCTCACAATGCTCTTCTCAATCTGG
AAAACGTGAGGATTTACAAGGAAATGAGGAATAATGTGAACAGAATAGTCAATTGCGAGACTGCGAATTTGACAAAGACT
ATTAATGCTTCTCTAAGGCAGATAGAAAGTATAAATTACATTAAAAAAACTGTTGGACTTGATTATTTGCCCCCGAGTTT
GAGAGAGGTAGCAGAGCTGAGGGTTAAATACCCTGACCTCAGCTTAAAAGAATTAGGCAAAATGTTGGTTCCTCCTGTGG
GCAAGTCAGGGGTGAACCACAGGCTTAGGAAAATTGAAGAAATTTCAAACAAATTAAAAGAGAGGAGAGTTCAGTAA

Upstream 100 bases:

>100_bases
AAGATAAGGACTTTGTCAACAAACCATCCTCCTTTTTAAGGAGGGGTTTTTTTTTCAAAAATATGTAGTATAATAATGAT
AAGCCGGTGAGGTGGTCTCT

Downstream 100 bases:

>100_bases
TGAAAGAAGTTACTATTGAAATCAAAAATAAGACAGGGCTTCATGCAAGACCTGCGGCTTTATTTGTCCAAACAGCCAGT
AAATTTTCTTCCCAGATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSFSSDTKNELSRIYPEDRESKIAELAAIIRMIGSVSFYGNNKLSLTLSTENASVARLTFKLLKDLFKVAPEVMVRRGKY
LKKALTYILFVSDTKAVRDILEETKILNRERGHVKLNYGIDRKIIRTVKMKKAYLRGAFLGGGSISDPEKAYHLEFVTHN
LEHGQDLSNLINSFNLNSKVIARKNSYVVYLKEGEQIVDLLNIMGAHNALLNLENVRIYKEMRNNVNRIVNCETANLTKT
INASLRQIESINYIKKTVGLDYLPPSLREVAELRVKYPDLSLKELGKMLVPPVGKSGVNHRLRKIEEISNKLKERRVQ

Sequences:

>Translated_318_residues
MSFSSDTKNELSRIYPEDRESKIAELAAIIRMIGSVSFYGNNKLSLTLSTENASVARLTFKLLKDLFKVAPEVMVRRGKY
LKKALTYILFVSDTKAVRDILEETKILNRERGHVKLNYGIDRKIIRTVKMKKAYLRGAFLGGGSISDPEKAYHLEFVTHN
LEHGQDLSNLINSFNLNSKVIARKNSYVVYLKEGEQIVDLLNIMGAHNALLNLENVRIYKEMRNNVNRIVNCETANLTKT
INASLRQIESINYIKKTVGLDYLPPSLREVAELRVKYPDLSLKELGKMLVPPVGKSGVNHRLRKIEEISNKLKERRVQ
>Mature_317_residues
SFSSDTKNELSRIYPEDRESKIAELAAIIRMIGSVSFYGNNKLSLTLSTENASVARLTFKLLKDLFKVAPEVMVRRGKYL
KKALTYILFVSDTKAVRDILEETKILNRERGHVKLNYGIDRKIIRTVKMKKAYLRGAFLGGGSISDPEKAYHLEFVTHNL
EHGQDLSNLINSFNLNSKVIARKNSYVVYLKEGEQIVDLLNIMGAHNALLNLENVRIYKEMRNNVNRIVNCETANLTKTI
NASLRQIESINYIKKTVGLDYLPPSLREVAELRVKYPDLSLKELGKMLVPPVGKSGVNHRLRKIEEISNKLKERRVQ

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_THETN (Q8R909)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_623409.1
- GeneID:   997008
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1821
- NMPDR:   fig|273068.3.peg.1559
- HOGENOM:   HBG485718
- OMA:   LERKKGY
- ProtClustDB:   CLSK901431
- BioCyc:   TTEN273068:TTE1821-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 36294; Mature: 36163

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSSDTKNELSRIYPEDRESKIAELAAIIRMIGSVSFYGNNKLSLTLSTENASVARLTF
CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCCEEEEEEECCCCHHHHHHH
KLLKDLFKVAPEVMVRRGKYLKKALTYILFVSDTKAVRDILEETKILNRERGHVKLNYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCEEEEECCC
DRKIIRTVKMKKAYLRGAFLGGGSISDPEKAYHLEFVTHNLEHGQDLSNLINSFNLNSKV
CHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCHHCCHHHHHHHHHCCCCCEE
IARKNSYVVYLKEGEQIVDLLNIMGAHNALLNLENVRIYKEMRNNVNRIVNCETANLTKT
EEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHH
INASLRQIESINYIKKTVGLDYLPPSLREVAELRVKYPDLSLKELGKMLVPPVGKSGVNH
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHH
RLRKIEEISNKLKERRVQ
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFSSDTKNELSRIYPEDRESKIAELAAIIRMIGSVSFYGNNKLSLTLSTENASVARLTF
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCCEEEEEEECCCCHHHHHHH
KLLKDLFKVAPEVMVRRGKYLKKALTYILFVSDTKAVRDILEETKILNRERGHVKLNYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCEEEEECCC
DRKIIRTVKMKKAYLRGAFLGGGSISDPEKAYHLEFVTHNLEHGQDLSNLINSFNLNSKV
CHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCHHCCHHHHHHHHHCCCCCEE
IARKNSYVVYLKEGEQIVDLLNIMGAHNALLNLENVRIYKEMRNNVNRIVNCETANLTKT
EEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHH
INASLRQIESINYIKKTVGLDYLPPSLREVAELRVKYPDLSLKELGKMLVPPVGKSGVNH
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHH
RLRKIEEISNKLKERRVQ
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336