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The map label for this gene is ytsP [H]

Identifier: 20808162

GI number: 20808162

Start: 1687188

End: 1687658

Strand: Reverse

Name: ytsP [H]

Synonym: TTE1743

Alternate gene names: 20808162

Gene position: 1687658-1687188 (Counterclockwise)

Preceding gene: 20808163

Following gene: 20808161

Centisome position: 62.75

GC content: 35.24

Gene sequence:

>471_bases
ATGGAAAAGCAAAAGGTTTTTGAAAGGTTGATTGACGAAATTAAGGCAAAAGCAAGAGACATAACTGATATGGATACATT
TTACAAGGAAGTTGTGCGAATTTTATCCGAAAATGTGCCCTATTACAATTGGACGGGTTTTTATTTCATGAAAGACGGGG
AATTAGTGATAGGACCTTATATTGGCAGGCCTACAGAGCATGTTAGAATAAAAGTGGGACAGGGAGTTTGTGGAAGGGCT
GTAGCTGAGAAAAGCACTATAATAGTTGATGATGTGACTAAAGAAGATAATTATTTAGCCTGCAGCCTTGAGACAAAATC
TGAAATAGTAGTTCCAATTTGGGCTAATGGAGAAATAATAGGAGAAATAGACATTGACAGTGATGACTTGGCTGCTTTTG
ATGATAAGGATAAAATATTTTTAGAGGAAGTGGCTAAAATTATTGGTAGAAAATTAGAAGGAAAGTTTTAA

Upstream 100 bases:

>100_bases
TTGAATGACCCTAACAGGCAGTATTACGATTGAGTTTTTGTTTTTGATAGGTTTTATGGTAAAATTATATTGACAAAATT
TTTACAAGGGAGTTGTAGCT

Downstream 100 bases:

>100_bases
AGGAGGGATTTAGGTGAGAGAGAGAGTAGAAGAGATATTAAACCTTATAAAACCTTCACTTCAGGCAGATGGAGGAGATG
TAGAGCTTGTAGATGTCACC

Product: GAF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPYIGRPTEHVRIKVGQGVCGRA
VAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEIIGEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLEGKF

Sequences:

>Translated_156_residues
MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPYIGRPTEHVRIKVGQGVCGRA
VAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEIIGEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLEGKF
>Mature_156_residues
MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPYIGRPTEHVRIKVGQGVCGRA
VAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEIIGEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLEGKF

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=144, Percent_Identity=35.4166666666667, Blast_Score=90, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6322781, Length=113, Percent_Identity=47.787610619469, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 17787; Mature: 17787

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPY
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCEEEEEECCCEEEECC
IGRPTEHVRIKVGQGVCGRAVAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEII
CCCCCCEEEEEECCCCCCHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEE
GEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLEGKF
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPY
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEECCEEEEEECCCEEEECC
IGRPTEHVRIKVGQGVCGRAVAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEII
CCCCCCEEEEEECCCCCCHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEE
GEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLEGKF
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]