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The map label for this gene is 20807910

Identifier: 20807910

GI number: 20807910

Start: 1435238

End: 1435591

Strand: Reverse

Name: 20807910

Synonym: TTE1463

Alternate gene names: NA

Gene position: 1435591-1435238 (Counterclockwise)

Preceding gene: 20807911

Following gene: 20807909

Centisome position: 53.38

GC content: 35.59

Gene sequence:

>354_bases
GTGGAAGATGATTTTTTGTTTATGACCCTTTTATATGACTTTTACGGGGCCTTGCTCACTGATAAGCAGAGAGAAATTTT
CGAAATGTATTATCTGAATGACTACTCTCTCGGAGAGATATCTGAAATTCTCGATATATCCCGTCAGGGAGTGTATGACG
CCTTAAAAAGGGCAGAGGATTCCCTGGAATTTTATGAAGAAAAGTTGGGATTAGTAAAAAAGCACCAGGAAATGATGAAA
AAAATTGAAAAGATTAAAGAGTGCATAAAATTAATAAAGGAAAGGGAAAAGGACGAAGAGATTCTAAAAATTATTGAGGA
TATGGCTCGAGAGTTGGAAGAGTTAAATCCTTAG

Upstream 100 bases:

>100_bases
AATAAAACTGCAAAAAAATGAAAAAACAGAGTTGACAAAAATGAGGGCTTCATATAAAATCTTAATGTAAAGGTCAAAAC
CTTAACGGGTGGGATTCCTT

Downstream 100 bases:

>100_bases
GAGGTATTTTTTGATGGCTTTTGAAAGCCTTTCTGAAAGGCTGCAGGGAGTTTTTAAAAAGCTAAGGGGTAAGGGGAAAC
TGACGGAAAAAGACATAAAA

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MEDDFLFMTLLYDFYGALLTDKQREIFEMYYLNDYSLGEISEILDISRQGVYDALKRAEDSLEFYEEKLGLVKKHQEMMK
KIEKIKECIKLIKEREKDEEILKIIEDMARELEELNP

Sequences:

>Translated_117_residues
MEDDFLFMTLLYDFYGALLTDKQREIFEMYYLNDYSLGEISEILDISRQGVYDALKRAEDSLEFYEEKLGLVKKHQEMMK
KIEKIKECIKLIKEREKDEEILKIIEDMARELEELNP
>Mature_117_residues
MEDDFLFMTLLYDFYGALLTDKQREIFEMYYLNDYSLGEISEILDISRQGVYDALKRAEDSLEFYEEKLGLVKKHQEMMK
KIEKIKECIKLIKEREKDEEILKIIEDMARELEELNP

Specific function: Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein

COG id: COG2739

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0122 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1463_THETN (Q8R9W9)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_623081.1
- ProteinModelPortal:   Q8R9W9
- SMR:   Q8R9W9
- GeneID:   997283
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1463
- NMPDR:   fig|273068.3.peg.1428
- HOGENOM:   HBG427419
- OMA:   ILTRETH
- ProtClustDB:   PRK00118
- BioCyc:   TTEN273068:TTE1463-MONOMER
- HAMAP:   MF_00245
- InterPro:   IPR013324
- InterPro:   IPR007394
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF04297 UPF0122; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 14131; Mature: 14131

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDDFLFMTLLYDFYGALLTDKQREIFEMYYLNDYSLGEISEILDISRQGVYDALKRAED
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SLEFYEEKLGLVKKHQEMMKKIEKIKECIKLIKEREKDEEILKIIEDMARELEELNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEDDFLFMTLLYDFYGALLTDKQREIFEMYYLNDYSLGEISEILDISRQGVYDALKRAED
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SLEFYEEKLGLVKKHQEMMKKIEKIKECIKLIKEREKDEEILKIIEDMARELEELNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336