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The map label for this gene is rimM

Identifier: 20807906

GI number: 20807906

Start: 1432833

End: 1433339

Strand: Reverse

Name: rimM

Synonym: TTE1459

Alternate gene names: 20807906

Gene position: 1433339-1432833 (Counterclockwise)

Preceding gene: 20807907

Following gene: 20807905

Centisome position: 53.29

GC content: 38.26

Gene sequence:

>507_bases
ATGGCTGACTACTACAATGTGGGGAAAGTTACTTCTCCCCACGGAATAAGAGGGGAAATAAAAGTATATCCCCTTACCAA
TGTGCCTGAGAGATTTTACGACATCCCCTATATATGGGTCTTTGATGAAAAAGACATACCTTGCAAATATGAGATTGAAA
ATGTAAAAATTACATCAAAAGGAATGGTGCTTTTAAAACTCAAAGGAATTGATAGCAGAAATGACGCAGAAAAACTAAAA
GGCTTATTTCTTAAGGTTGATGCAGAAAATGCACTTAAGCTCGAGGAAGACGAATATTTTATAACTGACCTGATAGGAAT
GAAGGTTTACACAGAGGAAGGAGAATTAATAGGCACATTGGAGGAGGTTTTGCAGACAGGGGCAAATGATGTGTACGTCG
TAAAAGCAAAAGAAAGAGAAGTGCTGTTGCCTGCAATAAAAGAAGTGATAAAGAAAGTTGATGTAGAAGGCAAAGTGATG
ATTGTGCGCCTCTTGGAGGGGCTATAA

Upstream 100 bases:

>100_bases
GAAAACAGGGAAGAATTGCGCAGGCTATAAGGACTTTGGTTAAAGCTGCTGCCCTAAAGGAGAAAAAGCGTGTGATTGTT
GAGATAATTTAGGTGATAGT

Downstream 100 bases:

>100_bases
ATGATTTTTGATGTTTTAACGCTGTTTCCTGAGATGTTTGAATGCGTTCTTTCTCACAGCATTTTGAAAAGGGCTGTTGA
AAAAAGTAAGCTAAAAGTGA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MADYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSKGMVLLKLKGIDSRNDAEKLK
GLFLKVDAENALKLEEDEYFITDLIGMKVYTEEGELIGTLEEVLQTGANDVYVVKAKEREVLLPAIKEVIKKVDVEGKVM
IVRLLEGL

Sequences:

>Translated_168_residues
MADYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSKGMVLLKLKGIDSRNDAEKLK
GLFLKVDAENALKLEEDEYFITDLIGMKVYTEEGELIGTLEEVLQTGANDVYVVKAKEREVLLPAIKEVIKKVDVEGKVM
IVRLLEGL
>Mature_167_residues
ADYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSKGMVLLKLKGIDSRNDAEKLKG
LFLKVDAENALKLEEDEYFITDLIGMKVYTEEGELIGTLEEVLQTGANDVYVVKAKEREVLLPAIKEVIKKVDVEGKVMI
VRLLEGL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=156, Percent_Identity=34.6153846153846, Blast_Score=83, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_THETN (Q8R9X3)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_623077.1
- ProteinModelPortal:   Q8R9X3
- SMR:   Q8R9X3
- GeneID:   997895
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE1459
- NMPDR:   fig|273068.3.peg.1424
- HOGENOM:   HBG703775
- OMA:   IASHRKH
- ProtClustDB:   PRK00122
- BioCyc:   TTEN273068:TTE1459-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19143; Mature: 19011

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSK
CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCEEEEECCCCCCEEEEEEEEEEECC
GMVLLKLKGIDSRNDAEKLKGLFLKVDAENALKLEEDEYFITDLIGMKVYTEEGELIGTL
CEEEEEEECCCCCCHHHHHCEEEEEEECCCCEEECCCCEEEEEEECEEEECCCCCCHHHH
EEVLQTGANDVYVVKAKEREVLLPAIKEVIKKVDVEGKVMIVRLLEGL
HHHHHCCCCCEEEEEECCCEEEHHHHHHHHHHCCCCCCEEEEEEHHCC
>Mature Secondary Structure 
ADYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSK
CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCEEEEECCCCCCEEEEEEEEEEECC
GMVLLKLKGIDSRNDAEKLKGLFLKVDAENALKLEEDEYFITDLIGMKVYTEEGELIGTL
CEEEEEEECCCCCCHHHHHCEEEEEEECCCCEEECCCCEEEEEEECEEEECCCCCCHHHH
EEVLQTGANDVYVVKAKEREVLLPAIKEVIKKVDVEGKVMIVRLLEGL
HHHHHCCCCCEEEEEECCCEEEHHHHHHHHHHCCCCCCEEEEEEHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336