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The map label for this gene is fliR [H]

Identifier: 20807871

GI number: 20807871

Start: 1404637

End: 1405419

Strand: Reverse

Name: fliR [H]

Synonym: TTE1424

Alternate gene names: 20807871

Gene position: 1405419-1404637 (Counterclockwise)

Preceding gene: 20807872

Following gene: 20807870

Centisome position: 52.26

GC content: 35.63

Gene sequence:

>783_bases
ATGGATGCGATGAGCTATATTTTGCAGAATGTACAGGTTTTTATATTACTTTTTGTAAGGATGCTAGGAATTTTTATACT
CGCTCCTTTTTTTGGGACAAAGCATGTTCCAACTGTTTTTAAAATAGGTTTGGGTTTTTTTGCATCTCTCATAGTGTTTG
ATGTAATGCCACCTGTTTCTATATCCATAGACAATGTTTTAACATATTTTTTGCTAGTGATTTCTGAATTTTTAGTGGGA
CTTACAATAGGGCTTGCCTCCATGATATCTTTTAGCGCGGTGTATTTAGCAGGTCAGCTCATAGATTATCAGCTTGGCTT
TGGGCTTGTAAACATTCTGGACATTCACAGTGAAGCACAGGTGCCACTCATGGGCAATTTTATATACATCATGACAATTT
TGATATTCATGCTGATGAATGGACATTATCTTCTTTTTACCTTTTTAGCAAAGAGCACCGAAATAATACCTATTGGGAAA
ATTTATTTCGATTTATCAGGAATGTTACAGGTCTTAACTAAAATGGTATCAGACATGTTTGCGATAGGCTTTAGAATAAG
CGCTCCTATAATTTTAACCACTGTTTTGACAGATTTAGTTTTGGGGATAATTTCCCGGACCATCCCGCAGCTTAACGTAT
TTATGGTGGGAATGCCTGCCAAAGTTTTTGTAGGGATTTTTACACTGATTATTATGTTGCCAATGTACCTTACCATAGTG
GATTTTATATTCAACGGCATGAATGCAGATATTTTCAGGCTGATGAAATTAATGACAAGGTGA

Upstream 100 bases:

>100_bases
TTTAAGTTTGATACTGTTTGGACCTTGGATGCTTACTACCCTTGTAAATTACACACAGCGCCTGTTTCTCAATATAAATA
ACTTCATAAAGTGATGTGCT

Downstream 100 bases:

>100_bases
TGACTTTGAGCAAAATAAATCTGCAGCTTTTTGCTGGGGAGAAGACGGAACCAGCTACTCCAAAGAGAAGGCAGGAGGCT
AGAAAAAAAGGACAGGTTTT

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDAMSYILQNVQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVSISIDNVLTYFLLVISEFLVG
LTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFIYIMTILIFMLMNGHYLLFTFLAKSTEIIPIGK
IYFDLSGMLQVLTKMVSDMFAIGFRISAPIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIV
DFIFNGMNADIFRLMKLMTR

Sequences:

>Translated_260_residues
MDAMSYILQNVQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVSISIDNVLTYFLLVISEFLVG
LTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFIYIMTILIFMLMNGHYLLFTFLAKSTEIIPIGK
IYFDLSGMLQVLTKMVSDMFAIGFRISAPIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIV
DFIFNGMNADIFRLMKLMTR
>Mature_260_residues
MDAMSYILQNVQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVSISIDNVLTYFLLVISEFLVG
LTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFIYIMTILIFMLMNGHYLLFTFLAKSTEIIPIGK
IYFDLSGMLQVLTKMVSDMFAIGFRISAPIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIV
DFIFNGMNADIFRLMKLMTR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=240, Percent_Identity=27.9166666666667, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29095; Mature: 29095

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMSYILQNVQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
ISIDNVLTYFLLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VPLMGNFIYIMTILIFMLMNGHYLLFTFLAKSTEIIPIGKIYFDLSGMLQVLTKMVSDMF
CCHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
AIGFRISAPIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIV
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHH
DFIFNGMNADIFRLMKLMTR
HHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MDAMSYILQNVQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
ISIDNVLTYFLLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VPLMGNFIYIMTILIFMLMNGHYLLFTFLAKSTEIIPIGKIYFDLSGMLQVLTKMVSDMF
CCHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
AIGFRISAPIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIV
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHH
DFIFNGMNADIFRLMKLMTR
HHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]