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The map label for this gene is ymdB [H]

Identifier: 20807818

GI number: 20807818

Start: 1353577

End: 1354356

Strand: Reverse

Name: ymdB [H]

Synonym: TTE1371

Alternate gene names: 20807818

Gene position: 1354356-1353577 (Counterclockwise)

Preceding gene: 20807819

Following gene: 20807817

Centisome position: 50.36

GC content: 37.95

Gene sequence:

>780_bases
ATGAGAATACTCATTATAGGAGATATAGTTGGAAGACCTGGTAGAAATGCCTTGAAAGAACATCTAGAAGAGTTAAAAAA
CTTTTATAATGTAAATTTGGTAATAGCAAATGGTGAAAATGCAGCAGGAGGAAATGGAATAACCAGAAAAGTAGCTGACG
AACTTTTTGAAATGGGAATTTCTCTTTTAACTACTGGAAACCACGTATGGGACCAGAAAGAAATACTTCAGTTCATAGAT
GAGGAACCTCGAATTTTAAGACCTGCCAACTATCTAGAAGGGACTCCTGGCAGAGGTTCTGCTGTGATAAACCTCGATGG
AGTAAAAGTGGGCGTGTTAAACCTTCAAGGGACTACATTTATGCCCTGCAATAGAAATCCCTTTTTTGTGGCAATAGAAG
AGGTAGAAAAATTAAAAGCCGAGACAAACATTATACTGGTGGATTTCCATGCAGAGGCTACTTCGGAAAAGATAGCGATG
GGTTATTTCCTAGATGGAAAAGTGAGCTGCGTTTTTGGAACGCATACTCACGTTCAGACAGCCGATGAAAAAATCTTACC
AAATGGCACTGCTTATATCACTGATATAGGGATGACAGGGCCTTATGAATCTGTCCTTGGAATAGATAAAGAACTGATAA
TAAAGAGATTTACTTCTTCTGTACCTCTCCGCTTTGAAGTAGCAAAAGGTCCTGCGCAAATAAATGGGATAGTGATTGAG
GTGGATGAAAATACAGGCAAATCTTTGAGCATAGAAAGAATTAATAAAATTTGTACATAA

Upstream 100 bases:

>100_bases
TTGAAAAAAAGCGTGCGTTTCGCACGCTTTAAAAGTTTATAAATTTGTGCAATAATAATTGGTAGGAGTTTTTCTAAAAA
ATTTTACTCGGAGGTAGAAA

Downstream 100 bases:

>100_bases
AAAAGAAGGATTTTTTAAATTGGTGTAGAATATTTAAACCATGAGAAAATTATTTTTAAGGGGGAAAAAATAATGGAAGT
ATTAAAAGTTTCAGCAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRILIIGDIVGRPGRNALKEHLEELKNFYNVNLVIANGENAAGGNGITRKVADELFEMGISLLTTGNHVWDQKEILQFID
EEPRILRPANYLEGTPGRGSAVINLDGVKVGVLNLQGTTFMPCNRNPFFVAIEEVEKLKAETNIILVDFHAEATSEKIAM
GYFLDGKVSCVFGTHTHVQTADEKILPNGTAYITDIGMTGPYESVLGIDKELIIKRFTSSVPLRFEVAKGPAQINGIVIE
VDENTGKSLSIERINKICT

Sequences:

>Translated_259_residues
MRILIIGDIVGRPGRNALKEHLEELKNFYNVNLVIANGENAAGGNGITRKVADELFEMGISLLTTGNHVWDQKEILQFID
EEPRILRPANYLEGTPGRGSAVINLDGVKVGVLNLQGTTFMPCNRNPFFVAIEEVEKLKAETNIILVDFHAEATSEKIAM
GYFLDGKVSCVFGTHTHVQTADEKILPNGTAYITDIGMTGPYESVLGIDKELIIKRFTSSVPLRFEVAKGPAQINGIVIE
VDENTGKSLSIERINKICT
>Mature_259_residues
MRILIIGDIVGRPGRNALKEHLEELKNFYNVNLVIANGENAAGGNGITRKVADELFEMGISLLTTGNHVWDQKEILQFID
EEPRILRPANYLEGTPGRGSAVINLDGVKVGVLNLQGTTFMPCNRNPFFVAIEEVEKLKAETNIILVDFHAEATSEKIAM
GYFLDGKVSCVFGTHTHVQTADEKILPNGTAYITDIGMTGPYESVLGIDKELIIKRFTSSVPLRFEVAKGPAQINGIVIE
VDENTGKSLSIERINKICT

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28426; Mature: 28426

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIIGDIVGRPGRNALKEHLEELKNFYNVNLVIANGENAAGGNGITRKVADELFEMGI
CEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
SLLTTGNHVWDQKEILQFIDEEPRILRPANYLEGTPGRGSAVINLDGVKVGVLNLQGTTF
EEEECCCCCCCHHHHHHHHCCCCCEECCCHHCCCCCCCCEEEEEECCEEEEEEEECCCEE
MPCNRNPFFVAIEEVEKLKAETNIILVDFHAEATSEKIAMGYFLDGKVSCVFGTHTHVQT
ECCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCEEEC
ADEKILPNGTAYITDIGMTGPYESVLGIDKELIIKRFTSSVPLRFEVAKGPAQINGIVIE
CCCEECCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEECCEEEE
VDENTGKSLSIERINKICT
EECCCCCEEEHHHHHHHCC
>Mature Secondary Structure
MRILIIGDIVGRPGRNALKEHLEELKNFYNVNLVIANGENAAGGNGITRKVADELFEMGI
CEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
SLLTTGNHVWDQKEILQFIDEEPRILRPANYLEGTPGRGSAVINLDGVKVGVLNLQGTTF
EEEECCCCCCCHHHHHHHHCCCCCEECCCHHCCCCCCCCEEEEEECCEEEEEEEECCCEE
MPCNRNPFFVAIEEVEKLKAETNIILVDFHAEATSEKIAMGYFLDGKVSCVFGTHTHVQT
ECCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCEEEC
ADEKILPNGTAYITDIGMTGPYESVLGIDKELIIKRFTSSVPLRFEVAKGPAQINGIVIE
CCCEECCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEECCEEEE
VDENTGKSLSIERINKICT
EECCCCCEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]