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The map label for this gene is yqxC [H]

Identifier: 20807748

GI number: 20807748

Start: 1290215

End: 1291012

Strand: Direct

Name: yqxC [H]

Synonym: TTE1299

Alternate gene names: 20807748

Gene position: 1290215-1291012 (Clockwise)

Preceding gene: 20807747

Following gene: 20807749

Centisome position: 47.97

GC content: 37.97

Gene sequence:

>798_bases
ATGAAGGAGAGAATAGATGTACTTCTCGTAAAAAGGGGCTTTTTCTCTTCAAGAGAAAAGGCAAAAGCAGCTATAATGGC
AGGAGAAGTGTACGTAGACGGCAAAAGAGCCGAAAAAGCTGGAGAAATGGTAAAAGAAGATTCAAAAATTGAAGTAAAAG
GTAATTCTCTTCCTTATGTCAGCAGAGGAGGACTTAAACTAGAAAAAGCTCTTCAACTCTTTGGCATTGATGTCAGGGGT
AAAATTGCCTTAGATGTAGGCGCTTCTACTGGTGGTTTTACTGACTGCCTTTTAAAGCACGGGGCACAGAAGGTGTACGC
TGTTGATGTCGGTTACGGACAGCTTCACTGGAGTTTAAGAAATGATCCGAGAGTTGTCGTAATGGAAAAAACTAACATAA
GATTTTTAAATGCACTTCCCGAGATGGTGGATATAATAACTATAGACGTTTCCTTTATTTCACTTGAGATTGTAGTGCCT
GCTGCTGATAAATTCTTAAAAAGCGAAGGAGAAATAGTGGCTTTGATAAAGCCCCAGTTTGAGGCCGGAAGGGAAAAAGT
AGGGAAAAAGGGGATTGTAAGGGATAAAGATGTGCACAAAGAAGTGCTTGAAAAGATTATAAAATTGTTTAAAAATATAA
ACTACGGAGTATGCGGAATTACTTATTCGCCTATAAAAGGAGCAGAGGGAAATATTGAGTACTTGATCTACGGAAAAAAG
GGAAAATGCGATGAAAAGGAAATAGAAGTTGAAAAAATAGTTGAAGAAGCCTTTAAAAATTTGTGGCAGGAAAAATGA

Upstream 100 bases:

>100_bases
TAGAACATGGAGATGTAGAAAGCTTGTTTAAAAAGTACGGTTTAGATTCTCAGTCAATAGCCGATACTATTTTACAAAGG
TACAAGGAAATGAGGGGATC

Downstream 100 bases:

>100_bases
ATTTTGTGTAGAATAATGATAAATGTGGTGATATAATAATGAAAAAAGTCGGGGTAATTCCAAATATAAATAAAGACAAG
GACTTAGAGGTTACAAAATC

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKERIDVLLVKRGFFSSREKAKAAIMAGEVYVDGKRAEKAGEMVKEDSKIEVKGNSLPYVSRGGLKLEKALQLFGIDVRG
KIALDVGASTGGFTDCLLKHGAQKVYAVDVGYGQLHWSLRNDPRVVVMEKTNIRFLNALPEMVDIITIDVSFISLEIVVP
AADKFLKSEGEIVALIKPQFEAGREKVGKKGIVRDKDVHKEVLEKIIKLFKNINYGVCGITYSPIKGAEGNIEYLIYGKK
GKCDEKEIEVEKIVEEAFKNLWQEK

Sequences:

>Translated_265_residues
MKERIDVLLVKRGFFSSREKAKAAIMAGEVYVDGKRAEKAGEMVKEDSKIEVKGNSLPYVSRGGLKLEKALQLFGIDVRG
KIALDVGASTGGFTDCLLKHGAQKVYAVDVGYGQLHWSLRNDPRVVVMEKTNIRFLNALPEMVDIITIDVSFISLEIVVP
AADKFLKSEGEIVALIKPQFEAGREKVGKKGIVRDKDVHKEVLEKIIKLFKNINYGVCGITYSPIKGAEGNIEYLIYGKK
GKCDEKEIEVEKIVEEAFKNLWQEK
>Mature_265_residues
MKERIDVLLVKRGFFSSREKAKAAIMAGEVYVDGKRAEKAGEMVKEDSKIEVKGNSLPYVSRGGLKLEKALQLFGIDVRG
KIALDVGASTGGFTDCLLKHGAQKVYAVDVGYGQLHWSLRNDPRVVVMEKTNIRFLNALPEMVDIITIDVSFISLEIVVP
AADKFLKSEGEIVALIKPQFEAGREKVGKKGIVRDKDVHKEVLEKIIKLFKNINYGVCGITYSPIKGAEGNIEYLIYGKK
GKCDEKEIEVEKIVEEAFKNLWQEK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29550; Mature: 29550

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERIDVLLVKRGFFSSREKAKAAIMAGEVYVDGKRAEKAGEMVKEDSKIEVKGNSLPYV
CCCCEEEEEEECCCCCCHHHHHHEEEECEEEECCCHHHHHHHHHCCCCEEEEECCCCCEE
SRGGLKLEKALQLFGIDVRGKIALDVGASTGGFTDCLLKHGAQKVYAVDVGYGQLHWSLR
ECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCEEEEEEEC
NDPRVVVMEKTNIRFLNALPEMVDIITIDVSFISLEIVVPAADKFLKSEGEIVALIKPQF
CCCEEEEEECCCCHHHHHHHHHHEEEEEEEEEEEEEEEECCHHHHHCCCCCEEEEECCCH
EAGREKVGKKGIVRDKDVHKEVLEKIIKLFKNINYGVCGITYSPIKGAEGNIEYLIYGKK
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCC
GKCDEKEIEVEKIVEEAFKNLWQEK
CCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKERIDVLLVKRGFFSSREKAKAAIMAGEVYVDGKRAEKAGEMVKEDSKIEVKGNSLPYV
CCCCEEEEEEECCCCCCHHHHHHEEEECEEEECCCHHHHHHHHHCCCCEEEEECCCCCEE
SRGGLKLEKALQLFGIDVRGKIALDVGASTGGFTDCLLKHGAQKVYAVDVGYGQLHWSLR
ECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCEEEEEEEC
NDPRVVVMEKTNIRFLNALPEMVDIITIDVSFISLEIVVPAADKFLKSEGEIVALIKPQF
CCCEEEEEECCCCHHHHHHHHHHEEEEEEEEEEEEEEEECCHHHHHCCCCCEEEEECCCH
EAGREKVGKKGIVRDKDVHKEVLEKIIKLFKNINYGVCGITYSPIKGAEGNIEYLIYGKK
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCC
GKCDEKEIEVEKIVEEAFKNLWQEK
CCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]