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The map label for this gene is ydhD [H]

Identifier: 20807343

GI number: 20807343

Start: 871336

End: 872259

Strand: Reverse

Name: ydhD [H]

Synonym: TTE0862

Alternate gene names: 20807343

Gene position: 872259-871336 (Counterclockwise)

Preceding gene: 20807347

Following gene: 20807342

Centisome position: 32.43

GC content: 38.96

Gene sequence:

>924_bases
ATGGACAACAAGTGGTATTTTGATATAGCACCTGGATCCATTGCTGATTTACAACAGCACGCAAGAGATATAACAACATT
AATTCCCTTCTGGTATGGGGTAAAAGAAGATGGCACATTGGCAGACATGTCCTCCAGTGAGGTCAAAAAAATTGCCTCTG
ATAACAATTTACCTATTTATCCCATAATTCACAATTACTCAGACCCAAAAAAATCTCAGCTAATCCACGACCTAATATCT
ACTCCCCACTTGAGAAGAACTCTAATCTCAAACATACGCAATATGCTTGAAGTAAATAACTATCCCGGAGTAAATATAGA
CTTTGAATTCGTCCCTCCTGAAGACAGGGAAAACTTAAACATTTTTATACATGACCTGTATGCCACCTTAAAACCCACAG
GTAGAACTGTCACAATTTCTGTGCCAGCAGAGCTAACTGACAACCCAAGACATCCATTTTCTGGAGCTTTTCAATACTCC
TTTATCGCCCAATACGCCGATGAAATATACATCCTAGCCTACGACGAACACTTTTCACAGCCTGGTCCGATCTCTTCAAT
AGGCTTTGTCACAAGTGTTTTAAATTACGCCGTAACAGTGATACCTCCTCAAAAAATATGGCTGGGAATGGCTGTTTATG
GGTATGATTGGACACAGGGCGTAAATTACCCAAGAACTCTAACATACCAACAAGCTGTGGACTTAGCAAAAAATTTAGGA
GTAACTATAATATACGACCAAACCGCTCAAGAATCCACTTACACTTACGTATTAGACGGCAAAGTACACTCAGTTTGGTT
TGAAGATTCAAAAAGTTTTTCTGCAAAATTATCTCTAGTAGACAGCTACAAACTATCCGGTATAGCCGTGTGGAGATTGG
GGCAAGAAGACCTTAACATATGGAACATTTTAAAAACAAAATAA

Upstream 100 bases:

>100_bases
TGTCCTTCTTCTCATATTTTTTCACTCCTTATCGCCCTATAGTTCCATTATACATATTATGAAAATATAAATCAATTTTA
AAATTTTCGGAGGGGTTAAA

Downstream 100 bases:

>100_bases
TTTTCCTCTCATGGGAACTTTTTTATCTTTTTTACGTCTAATATAGTGAAAAAACTAAAGGGAGGTCTATCTTCATGAGA
AAGTTTATCCCTATTTTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDNKWYFDIAPGSIADLQQHARDITTLIPFWYGVKEDGTLADMSSSEVKKIASDNNLPIYPIIHNYSDPKKSQLIHDLIS
TPHLRRTLISNIRNMLEVNNYPGVNIDFEFVPPEDRENLNIFIHDLYATLKPTGRTVTISVPAELTDNPRHPFSGAFQYS
FIAQYADEIYILAYDEHFSQPGPISSIGFVTSVLNYAVTVIPPQKIWLGMAVYGYDWTQGVNYPRTLTYQQAVDLAKNLG
VTIIYDQTAQESTYTYVLDGKVHSVWFEDSKSFSAKLSLVDSYKLSGIAVWRLGQEDLNIWNILKTK

Sequences:

>Translated_307_residues
MDNKWYFDIAPGSIADLQQHARDITTLIPFWYGVKEDGTLADMSSSEVKKIASDNNLPIYPIIHNYSDPKKSQLIHDLIS
TPHLRRTLISNIRNMLEVNNYPGVNIDFEFVPPEDRENLNIFIHDLYATLKPTGRTVTISVPAELTDNPRHPFSGAFQYS
FIAQYADEIYILAYDEHFSQPGPISSIGFVTSVLNYAVTVIPPQKIWLGMAVYGYDWTQGVNYPRTLTYQQAVDLAKNLG
VTIIYDQTAQESTYTYVLDGKVHSVWFEDSKSFSAKLSLVDSYKLSGIAVWRLGQEDLNIWNILKTK
>Mature_307_residues
MDNKWYFDIAPGSIADLQQHARDITTLIPFWYGVKEDGTLADMSSSEVKKIASDNNLPIYPIIHNYSDPKKSQLIHDLIS
TPHLRRTLISNIRNMLEVNNYPGVNIDFEFVPPEDRENLNIFIHDLYATLKPTGRTVTISVPAELTDNPRHPFSGAFQYS
FIAQYADEIYILAYDEHFSQPGPISSIGFVTSVLNYAVTVIPPQKIWLGMAVYGYDWTQGVNYPRTLTYQQAVDLAKNLG
VTIIYDQTAQESTYTYVLDGKVHSVWFEDSKSFSAKLSLVDSYKLSGIAVWRLGQEDLNIWNILKTK

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 34914; Mature: 34914

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKWYFDIAPGSIADLQQHARDITTLIPFWYGVKEDGTLADMSSSEVKKIASDNNLPIY
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCCCEEE
PIIHNYSDPKKSQLIHDLISTPHLRRTLISNIRNMLEVNNYPGVNIDFEFVPPEDRENLN
EEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCE
IFIHDLYATLKPTGRTVTISVPAELTDNPRHPFSGAFQYSFIAQYADEIYILAYDEHFSQ
EEEEEEEHHCCCCCCEEEEEECHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHCCCC
PGPISSIGFVTSVLNYAVTVIPPQKIWLGMAVYGYDWTQGVNYPRTLTYQQAVDLAKNLG
CCCCCHHHHHHHHHHHEEEEECCHHHEEEEEEECCCHHCCCCCCCEEHHHHHHHHHHHCC
VTIIYDQTAQESTYTYVLDGKVHSVWFEDSKSFSAKLSLVDSYKLSGIAVWRLGQEDLNI
EEEEECCCCCCCEEEEEEECEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCE
WNILKTK
EEEEECC
>Mature Secondary Structure
MDNKWYFDIAPGSIADLQQHARDITTLIPFWYGVKEDGTLADMSSSEVKKIASDNNLPIY
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCCCEEE
PIIHNYSDPKKSQLIHDLISTPHLRRTLISNIRNMLEVNNYPGVNIDFEFVPPEDRENLN
EEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCE
IFIHDLYATLKPTGRTVTISVPAELTDNPRHPFSGAFQYSFIAQYADEIYILAYDEHFSQ
EEEEEEEHHCCCCCCEEEEEECHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHCCCC
PGPISSIGFVTSVLNYAVTVIPPQKIWLGMAVYGYDWTQGVNYPRTLTYQQAVDLAKNLG
CCCCCHHHHHHHHHHHEEEEECCHHHEEEEEEECCCHHCCCCCCCEEHHHHHHHHHHHCC
VTIIYDQTAQESTYTYVLDGKVHSVWFEDSKSFSAKLSLVDSYKLSGIAVWRLGQEDLNI
EEEEECCCCCCCEEEEEEECEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCE
WNILKTK
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]