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The map label for this gene is IndA

Identifier: 20806844

GI number: 20806844

Start: 345481

End: 346404

Strand: Direct

Name: IndA

Synonym: TTE0327

Alternate gene names: 20806844

Gene position: 345481-346404 (Clockwise)

Preceding gene: 20806843

Following gene: 20806846

Centisome position: 12.85

GC content: 38.74

Gene sequence:

>924_bases
ATGAATAGATTTATCGATTTGTCAGAAGAAGTAAAAAGTGCCTTAGAGGAAAGAAGGCCAGTTGTGGCTTTAGAATCTAC
GATAATATCCCACGGTATGCCCTACCCACAAAATATTGAAACTGCCAGAGCCTTAGAAGAAATTGTAAGGGAAAATGGCG
CTGTACCTGCTACAATTGCAATTATAGGAGGAAAAATAAAAATAGGTCTAAATGAAGAGGAACTGGAGTTTATGGGTACA
TCAAAAGAAATATTAAAAGCCAGCAAAAGAGATTTGCCTGTGGTCTTAGCAAAAGGGTTAAACGCTGCTACTACTGTTTC
TGCCACGATGATTTGTGCAAACCTTGCAGGTATAAAGGTATTTGTGACAGGAGGAATAGGAGGAGTACACAGAGGGGCAG
AAGAGACTTTCGATATATCTGCCGATTTGCAAGAACTTGCAAATACAAATGTAGCAGTTGTATGTGCAGGAGCAAAAGCT
ATACTTGATTTACCTCGTACTTTAGAATATCTTGAAACCTTTGGTGTTCCTGTAATTGGATTTAGAACAGAGGAATTTCC
TGCTTTTTACACAAGAGAGAGCGGGCTCAAAGTGGACTACAGAGTGGAAGATGAAGTAGAAGCCGCAAAGGTTATAAAAA
CTAAATGGGATTTGGGACTTAAAGGAGGGATTTTAATAGCCAATCCCATTCCTGAAGAATATGCCCTAGACAGAGCTTAT
ATTGAAAAAGCCATAGAAGAGGCTATTTTTGAAGCAGACAGACGAGGAATAAGGGGTAAAGCCCTTACGCCATTTTTGTT
GGAAAAGATAAAGGACCTGACAGAGGGTAAAAGTTTAAAAGCAAATATTGAACTTGTTAAGAATAATGCCAGAGTTGGAG
CCAAAATTGCTGTACAATTGAATAAACTGTATAAAGAGGCGTAG

Upstream 100 bases:

>100_bases
GGGACTTGCTGCAGCTTCCCTTACTATATCCTCACCTTATACAGTTAATCCGTTTTTAAATGAAAATCAGTTAAAAAATA
TAGTAAAGGAGATTTGAAAA

Downstream 100 bases:

>100_bases
AACGCCTCTTTATACTTTATTACCTTCTTTATTACCTTCTTTCTCTGTCATGGACCTCGTCAATTATTTCCTGACGCATG
TTCTGTATGCTTATAAGCCT

Product: uncharacterized enzyme involved in pigment biosynthesis

Products: NA

Alternate protein names: PsiMP glycosidase

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNRFIDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIAIIGGKIKIGLNEEELEFMGT
SKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKVFVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKA
ILDLPRTLEYLETFGVPVIGFRTEEFPAFYTRESGLKVDYRVEDEVEAAKVIKTKWDLGLKGGILIANPIPEEYALDRAY
IEKAIEEAIFEADRRGIRGKALTPFLLEKIKDLTEGKSLKANIELVKNNARVGAKIAVQLNKLYKEA

Sequences:

>Translated_307_residues
MNRFIDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIAIIGGKIKIGLNEEELEFMGT
SKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKVFVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKA
ILDLPRTLEYLETFGVPVIGFRTEEFPAFYTRESGLKVDYRVEDEVEAAKVIKTKWDLGLKGGILIANPIPEEYALDRAY
IEKAIEEAIFEADRRGIRGKALTPFLLEKIKDLTEGKSLKANIELVKNNARVGAKIAVQLNKLYKEA
>Mature_307_residues
MNRFIDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIAIIGGKIKIGLNEEELEFMGT
SKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKVFVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKA
ILDLPRTLEYLETFGVPVIGFRTEEFPAFYTRESGLKVDYRVEDEVEAAKVIKTKWDLGLKGGILIANPIPEEYALDRAY
IEKAIEEAIFEADRRGIRGKALTPFLLEKIKDLTEGKSLKANIELVKNNARVGAKIAVQLNKLYKEA

Specific function: Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil

COG id: COG2313

COG function: function code Q; Uncharacterized enzyme involved in pigment biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine-5'-phosphate glycosidase family

Homologues:

Organism=Escherichia coli, GI1788490, Length=301, Percent_Identity=58.4717607973422, Blast_Score=361, Evalue=1e-101,
Organism=Caenorhabditis elegans, GI25147470, Length=301, Percent_Identity=48.8372093023256, Blast_Score=301, Evalue=2e-82,
Organism=Drosophila melanogaster, GI24580669, Length=300, Percent_Identity=53.6666666666667, Blast_Score=318, Evalue=4e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSUG_THETN (Q8RCT3)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_622015.1
- ProteinModelPortal:   Q8RCT3
- SMR:   Q8RCT3
- GeneID:   997947
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE0327
- NMPDR:   fig|273068.3.peg.140
- HOGENOM:   HBG308892
- OMA:   PATIAVM
- ProtClustDB:   CLSK862888
- BioCyc:   TTEN273068:TTE0327-MONOMER
- HAMAP:   MF_01876
- InterPro:   IPR022830
- InterPro:   IPR007342
- PANTHER:   PTHR10584:SF1

Pfam domain/function: PF04227 Indigoidine_A; SSF110581 Indigdn_synthA

EC number: NA

Molecular weight: Translated: 33481; Mature: 33481

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFIDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIA
CCCCCCHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
IIGGKIKIGLNEEELEFMGTSKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKV
EECCEEEECCCHHHHHHCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEE
FVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKAILDLPRTLEYLETFGVPVIG
EEECCCCCCCCCCCHHCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEE
FRTEEFPAFYTRESGLKVDYRVEDEVEAAKVIKTKWDLGLKGGILIANPIPEEYALDRAY
EECCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHH
IEKAIEEAIFEADRRGIRGKALTPFLLEKIKDLTEGKSLKANIELVKNNARVGAKIAVQL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
NKLYKEA
HHHHHCC
>Mature Secondary Structure
MNRFIDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIA
CCCCCCHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
IIGGKIKIGLNEEELEFMGTSKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKV
EECCEEEECCCHHHHHHCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEE
FVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKAILDLPRTLEYLETFGVPVIG
EEECCCCCCCCCCCHHCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEE
FRTEEFPAFYTRESGLKVDYRVEDEVEAAKVIKTKWDLGLKGGILIANPIPEEYALDRAY
EECCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHH
IEKAIEEAIFEADRRGIRGKALTPFLLEKIKDLTEGKSLKANIELVKNNARVGAKIAVQL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
NKLYKEA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336