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The map label for this gene is HybF

Identifier: 20806658

GI number: 20806658

Start: 129967

End: 130311

Strand: Direct

Name: HybF

Synonym: TTE0129

Alternate gene names: 20806658

Gene position: 129967-130311 (Clockwise)

Preceding gene: 20806657

Following gene: 20806659

Centisome position: 4.83

GC content: 39.42

Gene sequence:

>345_bases
GTGCATGAGCTGTCTGTGACACAGGGCTTAGTTGATATGCTTGTAGAGGAAGCAGAAAAAAGAAAAGTCAAAAAAGTCAC
AAAGGTGACAGTAGTTATAGGGGAATTGACTGGGATTGAGAGCGAAAGTGTGAAATTTTACTTTGATATACTGACAGAAA
ATACTGTTGCAGAAGGTGCAGAATTGGTCTTTAAGATAGTAAGAGCGCAGTTTAAATGCACTCAATGTGGCAATGTGTTT
GAAAGGTCCAATTTCACTTTTAAGTGTCCTGTATGCGGAGGGCAGGGAGTACTAATTGATAAGAGGGGGAAAGAATTTTA
TATTGAGAGCATAGAGGTGGAATAG

Upstream 100 bases:

>100_bases
CTAAAAGAATACAGGCCCATATCTCACGAGAAATATGTGATAGTCCAGAAAAAAGAGACCAAAGCTTCAGCCGAAAAAGA
GGAGAAGGAAGGAATATAAA

Downstream 100 bases:

>100_bases
CATGGAGGAAATTGTAATAATAAGAGATGTTTTAGAGACGAATAAAAATATAGCCTCCGAAAACAAGGCTATTAAGGATG
AGAGAAATATTTTGATGGTG

Product: zinc finger protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILTENTVAEGAELVFKIVRAQFKCTQCGNVF
ERSNFTFKCPVCGGQGVLIDKRGKEFYIESIEVE

Sequences:

>Translated_114_residues
MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILTENTVAEGAELVFKIVRAQFKCTQCGNVF
ERSNFTFKCPVCGGQGVLIDKRGKEFYIESIEVE
>Mature_114_residues
MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILTENTVAEGAELVFKIVRAQFKCTQCGNVF
ERSNFTFKCPVCGGQGVLIDKRGKEFYIESIEVE

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family

Homologues:

Organism=Escherichia coli, GI1789365, Length=114, Percent_Identity=38.5964912280702, Blast_Score=86, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HYPA_THETN (Q8RDB2)

Other databases:

- EMBL:   AE008691
- RefSeq:   NP_621829.1
- GeneID:   996852
- GenomeReviews:   AE008691_GR
- KEGG:   tte:TTE0129
- NMPDR:   fig|273068.3.peg.485
- HOGENOM:   HBG688671
- OMA:   MHEVSLM
- ProtClustDB:   CLSK2461783
- BioCyc:   TTEN273068:TTE0129-MONOMER
- HAMAP:   MF_00213
- InterPro:   IPR000688
- InterPro:   IPR004039
- Gene3D:   G3DSA:2.20.28.10
- TIGRFAMs:   TIGR00100

Pfam domain/function: PF01155 HypA

EC number: NA

Molecular weight: Translated: 12815; Mature: 12815

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01249 HYPA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILTENTVAEGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEEECCCCHHHHH
ELVFKIVRAQFKCTQCGNVFERSNFTFKCPVCGGQGVLIDKRGKEFYIESIEVE
HHHHHHHHHHHCCCCCCCHHHCCCCEEECCCCCCCEEEEECCCCEEEEEEEECC
>Mature Secondary Structure
MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILTENTVAEGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEEECCCCHHHHH
ELVFKIVRAQFKCTQCGNVFERSNFTFKCPVCGGQGVLIDKRGKEFYIESIEVE
HHHHHHHHHHHCCCCCCCHHHCCCCEEECCCCCCCEEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336