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The map label for this gene is DppB [C]

Identifier: 20806588

GI number: 20806588

Start: 63630

End: 64616

Strand: Direct

Name: DppB [C]

Synonym: TTE0055

Alternate gene names: 20806588

Gene position: 63630-64616 (Clockwise)

Preceding gene: 20806587

Following gene: 20806589

Centisome position: 2.37

GC content: 37.18

Gene sequence:

>987_bases
ATGAATTACTTTGTAAATAGACTATTGTATCTACTTGTAGTGTTTGTTATTGCCATAAGCGGGGTGTTTGTTTTAGTCAA
CAATATGCCAGGCGACCCCGCTTATGGCCTGGCTGTTTATATTGCCCAACAGAGGAATATGCAGTTTGAACAGGCGCTGG
AGATAGCTCATAAGATGATGGGAATAGACCCTCATGAGTCTGTAGTAACAAGATATGTAAAATTTATGAACAATCTCTTA
AGAGGGAATTTTGGTTATTCTACTTTTTACAACACTAGTGTAAATGAAATCATAGCGAGGGCTTTGCCTTGGACTTTATT
TGTGATTTCTTTGGCGACTTTTATAAGTTTTAGTATTGGAATTTACCTGGGGGCATTTGCTGCTCAAAAAAGGGGTAAAA
CAATAGATACTCTTATTTCTACTCTCGCTAGTATAATTCAGGCAATTCCGCCTTTTATACTAGCAGTATTAATCTTATTT
GTTTTCTCTGTAAGATTTAGACTTTTGCCTCTTGGAGGAGCTTATCCTGTGGATATGGAACCTTCTCTGTCGATAAGTTT
TATCGGGAAGGTTTTACTTCACGCAGTTGGCCCCATTTTAGCTGTAGCTATACCTCAGATGGCTTCTTGGACTTTGTCTA
TGAGAGGTAACACTGCACAGGTTATGGAAGAAGATTTTATAAGATTTGCTGAAATGAGAGGATTAGCAGATTCTGTGATT
GCCTCTAAGTATATAAGGAATAATGCAATGCTTCCATTAGTGGCAAGTCTGGCAATTGGGATAGGGTATATGTTAGGAGG
ACAAACACTTGTTGAATCAATATTTAATTATCCCGGAATAGGATTTTACTTTGGAAAGGCAATTGCAGTAAGAGACTTTG
GGCTTTTAACAGGACTTTTTAGTTTAATTGTAATAGGTGTAATAGTGGCAACTTTTGTAGCAGATTTTGTGTACGCATTA
ATTGATCCGAGGGTGAAGTTAAAATGA

Upstream 100 bases:

>100_bases
GGTCATTGGCGCCAGGAGGAATTGAGAGAGTATACGACCTTCTCATTACCACAGGTAAGCTAGTCCCAGTAAAATAACAA
ATAACAGGCGGGGATAAAAG

Downstream 100 bases:

>100_bases
GAAAAGAGAGTTTGAAAAATTTTTATTATGATTATATACAACCGCTTTTGGTTAATAAAAAATCATTAATTGGACTTATC
ATACTAACCTTCTTCATTTT

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNYFVNRLLYLLVVFVIAISGVFVLVNNMPGDPAYGLAVYIAQQRNMQFEQALEIAHKMMGIDPHESVVTRYVKFMNNLL
RGNFGYSTFYNTSVNEIIARALPWTLFVISLATFISFSIGIYLGAFAAQKRGKTIDTLISTLASIIQAIPPFILAVLILF
VFSVRFRLLPLGGAYPVDMEPSLSISFIGKVLLHAVGPILAVAIPQMASWTLSMRGNTAQVMEEDFIRFAEMRGLADSVI
ASKYIRNNAMLPLVASLAIGIGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLFSLIVIGVIVATFVADFVYAL
IDPRVKLK

Sequences:

>Translated_328_residues
MNYFVNRLLYLLVVFVIAISGVFVLVNNMPGDPAYGLAVYIAQQRNMQFEQALEIAHKMMGIDPHESVVTRYVKFMNNLL
RGNFGYSTFYNTSVNEIIARALPWTLFVISLATFISFSIGIYLGAFAAQKRGKTIDTLISTLASIIQAIPPFILAVLILF
VFSVRFRLLPLGGAYPVDMEPSLSISFIGKVLLHAVGPILAVAIPQMASWTLSMRGNTAQVMEEDFIRFAEMRGLADSVI
ASKYIRNNAMLPLVASLAIGIGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLFSLIVIGVIVATFVADFVYAL
IDPRVKLK
>Mature_328_residues
MNYFVNRLLYLLVVFVIAISGVFVLVNNMPGDPAYGLAVYIAQQRNMQFEQALEIAHKMMGIDPHESVVTRYVKFMNNLL
RGNFGYSTFYNTSVNEIIARALPWTLFVISLATFISFSIGIYLGAFAAQKRGKTIDTLISTLASIIQAIPPFILAVLILF
VFSVRFRLLPLGGAYPVDMEPSLSISFIGKVLLHAVGPILAVAIPQMASWTLSMRGNTAQVMEEDFIRFAEMRGLADSVI
ASKYIRNNAMLPLVASLAIGIGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLFSLIVIGVIVATFVADFVYAL
IDPRVKLK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=331, Percent_Identity=29.0030211480363, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=26.2996941896024, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789965, Length=345, Percent_Identity=25.2173913043478, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789888, Length=328, Percent_Identity=25.9146341463415, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788504, Length=288, Percent_Identity=28.4722222222222, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=25.531914893617, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787550, Length=283, Percent_Identity=24.3816254416961, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36097; Mature: 36097

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFVNRLLYLLVVFVIAISGVFVLVNNMPGDPAYGLAVYIAQQRNMQFEQALEIAHKMM
CCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
GIDPHESVVTRYVKFMNNLLRGNFGYSTFYNTSVNEIIARALPWTLFVISLATFISFSIG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYLGAFAAQKRGKTIDTLISTLASIIQAIPPFILAVLILFVFSVRFRLLPLGGAYPVDME
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
PSLSISFIGKVLLHAVGPILAVAIPQMASWTLSMRGNTAQVMEEDFIRFAEMRGLADSVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ASKYIRNNAMLPLVASLAIGIGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLF
HHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
SLIVIGVIVATFVADFVYALIDPRVKLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNYFVNRLLYLLVVFVIAISGVFVLVNNMPGDPAYGLAVYIAQQRNMQFEQALEIAHKMM
CCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
GIDPHESVVTRYVKFMNNLLRGNFGYSTFYNTSVNEIIARALPWTLFVISLATFISFSIG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYLGAFAAQKRGKTIDTLISTLASIIQAIPPFILAVLILFVFSVRFRLLPLGGAYPVDME
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
PSLSISFIGKVLLHAVGPILAVAIPQMASWTLSMRGNTAQVMEEDFIRFAEMRGLADSVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ASKYIRNNAMLPLVASLAIGIGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLF
HHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
SLIVIGVIVATFVADFVYALIDPRVKLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA