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The map label for this gene is Arc1 [H]

Identifier: 20806551

GI number: 20806551

Start: 9290

End: 9619

Strand: Reverse

Name: Arc1 [H]

Synonym: TTE0009

Alternate gene names: 20806551

Gene position: 9619-9290 (Counterclockwise)

Preceding gene: 20806554

Following gene: 20806550

Centisome position: 0.36

GC content: 36.67

Gene sequence:

>330_bases
ATGGCCACATATGAAGATTTTTTAAAACTTGACATACGCGTGGGAAGAATAATTGAAGTGGAAGATTTCCCAAAAGCTAA
AAAACCAGCCTACAAGTTAAAAATAGACTTTGGAGAGCTGGGCGTAAAAACCTCCAGCGCTCAAATAACAAAGCTCTACA
AAAAAGAAGACTTGTACAACCGCTTAGTAGTCTGTGTTGTCAATTTCCCTCCGAAAAAAATTGCAGACTTCGTTTCAGAA
GTATTAGTTTTGGGCGTTGACGATAAAGAGGAAAACGTCGTTTTACTTCAGCCAGAAAGAGAAGTAAAAGTAGGAAATAA
AGTTTATTAA

Upstream 100 bases:

>100_bases
GAAAATTTCCCGGGAAATGTTTATTTTTATTATTCCCTATACTATAATATACTTAACAAATCTGCCTATATTATAATATA
CTTAAATTGAGGTGAATTCA

Downstream 100 bases:

>100_bases
AGGTGGGGAAAAAGTGAAAGGGCTAGGGGTAGCAATAGGAAAATTAGTAAACATCTCCTGTAAAATTACAGGCAAAGGAG
GAACTTCATTACCAGGTAAA

Product: EMAP domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MATYEDFLKLDIRVGRIIEVEDFPKAKKPAYKLKIDFGELGVKTSSAQITKLYKKEDLYNRLVVCVVNFPPKKIADFVSE
VLVLGVDDKEENVVLLQPEREVKVGNKVY

Sequences:

>Translated_109_residues
MATYEDFLKLDIRVGRIIEVEDFPKAKKPAYKLKIDFGELGVKTSSAQITKLYKKEDLYNRLVVCVVNFPPKKIADFVSE
VLVLGVDDKEENVVLLQPEREVKVGNKVY
>Mature_108_residues
ATYEDFLKLDIRVGRIIEVEDFPKAKKPAYKLKIDFGELGVKTSSAQITKLYKKEDLYNRLVVCVVNFPPKKIADFVSEV
LVLGVDDKEENVVLLQPEREVKVGNKVY

Specific function: Could serves as a molecular chaperone for exported proteins or alternatively acts by stabilizing the secA protein [H]

COG id: COG0073

COG function: function code R; EMAP domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR008231
- InterPro:   IPR002547 [H]

Pfam domain/function: PF01588 tRNA_bind [H]

EC number: NA

Molecular weight: Translated: 12477; Mature: 12346

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATYEDFLKLDIRVGRIIEVEDFPKAKKPAYKLKIDFGELGVKTSSAQITKLYKKEDLYN
CCCHHHHHEEEEEECEEEEECCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHCC
RLVVCVVNFPPKKIADFVSEVLVLGVDDKEENVVLLQPEREVKVGNKVY
EEEEEEECCCHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
ATYEDFLKLDIRVGRIIEVEDFPKAKKPAYKLKIDFGELGVKTSSAQITKLYKKEDLYN
CCHHHHHEEEEEECEEEEECCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHCC
RLVVCVVNFPPKKIADFVSEVLVLGVDDKEENVVLLQPEREVKVGNKVY
EEEEEEECCCHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1435734; 9384377 [H]