Click here to switch to the map view.

The map label for this gene is clpC [H]

Identifier: 203284735

GI number: 203284735

Start: 908948

End: 911182

Strand: Reverse

Name: clpC [H]

Synonym: BDU_847

Alternate gene names: 203284735

Gene position: 911182-908948 (Counterclockwise)

Preceding gene: 203284736

Following gene: 203284734

Centisome position: 97.8

GC content: 25.59

Gene sequence:

>2235_bases
ATGAACCTAGTTGAAATATCGTCAAGAGAAGTAGCTAGAAAAAATAAAAATAGAGAAGTCTCAAGTTGGCATTTATTAAT
GTCTATATTATTAATTCATCCTAAAAAATCTGAAATAAAAAATATAGAAACCAAAACTTTAAAAAATATCAAACAAGATA
CATTATATGAAATAGAAAAGCTAGAAAAAGTTTTAATTGGCACCAATGAAATTGTCATCCCAAAAATAAGCAGAGAAATC
TTTACTCTTATTGACCAAACAAAAAAAGAATTTAAGTCCAAAACTTTAATAGGCATAAAAGAAATTTTTTATCAGATTTT
AAAAACAAAAAAGCTTCTCAAAAAATATAAACTTAATAAACTAAGCTTTAACTTCGATGAAGATAATATAATAACAAGCA
TAGATAAAATAAGATTAATTGAAACATATAAAGAATTTGAAGATGAAACAAGACAAAACGACTACTTTGAAATTAACAAA
TACGTTAAAAATCTCACAACACTTGCAAAAGAAAAAAAACTCGATCCCCTAATAGGACGTGAAAAAGAAATTCAATCATT
AATAAGCATACTTGAACGAAGAAACAAAAATAGCACAATTTTAATAGGAGAACCTGGGATTGGAAAAACAGCAATTGTTG
AAGGACTTGCCATTAAAATTGCAAACAAAGAAATAAAAAGCCAATTACAAAATAAAATAATACTACAAATTGAAACTTCT
GACTTAGTTTCTGGAACTAAATATAGAGGTGAATTTGAAGAAAGATTAAATAATATAATTAAGTCTATAAAAAATAATAA
AAACATAATAATCTTTATTGATGAAATACACACTTTAATAGGAGCAGGAAATTCTGAAGGTTCTATTGACGCAGCAAATA
TCTTAAAACCTATTCTCTCTCGTTCTGCAATACAAATAATAGGTGCAACGACTTATGATGAATATAGAAAACACATATCC
AAAGACAAGGCATTCACTAGAAGATTTCAAACAATATCAATCAAAGAACCTGATGAAAAAGAAACTCTCAACATAATCAA
CAGCATAATAAAAAACTTTGAAAACTATCACGGCGTCACTTATGAAAAAGAAGCCATAGAAAATGTTATTAGCTTATCAT
CACAATATTTAACTAATAGAAAATTTCCCGATAAAGCAATTGATCTAATTGACATTGCTGGAGCCCAGAAAAAACAACAA
GAAATAAATACAAAAATAGTAAATGCCGAGGATATTAAAAATACAACAGATGAATTTTTTGGCATTAAGGTAAAACTTAA
TCTCACAGAAGAAATTGCATATCTTAAAGAAGAAACAATAAACATCAAAGAAAAAATAATTGGACAAGAATCTGCCATAG
ATGAAATCATTATAGAAATGGTAAAAACAAAACTAGGCATCAACAATAATATACAACCATTAACATCAATATTGCTCATA
GGTTCAAGTGGAAGTGGAAAAACAATACTATCAAAAACAATATCAAAAATCATGATTAAAGATCAAAATTCAATACTACA
GTTAGATATGTCAGATTACAGAGAAGAAACTTCTATATCAAAACTAATAGGAACAAATCCAGGATACGCAGGTTATACTG
ACGGTGGTATTTTAATAAACAGACTAAAATATAATCCTAGAGCATTCATCATATTTGAAAATATTGAATATGCGCATAAT
TCCGTAATGAGCATAATAGAACAAATACTTGAAAATGGAGAACTAATTGACAATAAAGAAGATAAAATATCTTTTAAAAA
TAGCATCATTGTTTTAAGTACATCTATTGGCAGTAAAATATTACTTGGAAAAGGCATCCTTGGATTTAATAAAACAGACA
ATAATATAGATATTAAAAGCACAATCAATAATGAACTTAAAACAAAACTTAAGTTATCATTAATAGATAAAATACAAAAA
AAAATAATTCTTAATGTATTAACAGAAAAAGACCTCAGCATAATTTACGATAATTACTGCAAAGAACTTACTCAAAAATT
TAGCCTAAAAAACATTCAAATAGAAATTGATGACTCTCTTAAAAATCATATAATAAAAAAATATTATGATAAAAATTCCG
GAGCAAGAAGCATTTTAAATGCAGTAAAAGAAAACATAGAAGAAAAAATTATTAATCAAATATTTCACAATCCTAATATA
AATCTAATAAAAATATATTTAGAACAAAACAATATAAAAATCAAACAAAAGGAAATTTTATGTTCAAAAAAGTAG

Upstream 100 bases:

>100_bases
ATATCCATATATTCAAGATACGAACAAAAAAATAGTATTTTTGATATAATGAACAAAATAAAGATGGAGATAGAAAAATA
TTAATATAACAGACAAATTA

Downstream 100 bases:

>100_bases
AAAATAAAGTACATTTTCCCCAATTAGAAGAAAAAATATTACAATTTTGGAATGATAATAAAATTTTCGAAAAATCGATG
AAACAACGAGAAGGATGTGA

Product: ATP-dependent Clp protease, subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MNLVEISSREVARKNKNREVSSWHLLMSILLIHPKKSEIKNIETKTLKNIKQDTLYEIEKLEKVLIGTNEIVIPKISREI
FTLIDQTKKEFKSKTLIGIKEIFYQILKTKKLLKKYKLNKLSFNFDEDNIITSIDKIRLIETYKEFEDETRQNDYFEINK
YVKNLTTLAKEKKLDPLIGREKEIQSLISILERRNKNSTILIGEPGIGKTAIVEGLAIKIANKEIKSQLQNKIILQIETS
DLVSGTKYRGEFEERLNNIIKSIKNNKNIIIFIDEIHTLIGAGNSEGSIDAANILKPILSRSAIQIIGATTYDEYRKHIS
KDKAFTRRFQTISIKEPDEKETLNIINSIIKNFENYHGVTYEKEAIENVISLSSQYLTNRKFPDKAIDLIDIAGAQKKQQ
EINTKIVNAEDIKNTTDEFFGIKVKLNLTEEIAYLKEETINIKEKIIGQESAIDEIIIEMVKTKLGINNNIQPLTSILLI
GSSGSGKTILSKTISKIMIKDQNSILQLDMSDYREETSISKLIGTNPGYAGYTDGGILINRLKYNPRAFIIFENIEYAHN
SVMSIIEQILENGELIDNKEDKISFKNSIIVLSTSIGSKILLGKGILGFNKTDNNIDIKSTINNELKTKLKLSLIDKIQK
KIILNVLTEKDLSIIYDNYCKELTQKFSLKNIQIEIDDSLKNHIIKKYYDKNSGARSILNAVKENIEEKIINQIFHNPNI
NLIKIYLEQNNIKIKQKEILCSKK

Sequences:

>Translated_744_residues
MNLVEISSREVARKNKNREVSSWHLLMSILLIHPKKSEIKNIETKTLKNIKQDTLYEIEKLEKVLIGTNEIVIPKISREI
FTLIDQTKKEFKSKTLIGIKEIFYQILKTKKLLKKYKLNKLSFNFDEDNIITSIDKIRLIETYKEFEDETRQNDYFEINK
YVKNLTTLAKEKKLDPLIGREKEIQSLISILERRNKNSTILIGEPGIGKTAIVEGLAIKIANKEIKSQLQNKIILQIETS
DLVSGTKYRGEFEERLNNIIKSIKNNKNIIIFIDEIHTLIGAGNSEGSIDAANILKPILSRSAIQIIGATTYDEYRKHIS
KDKAFTRRFQTISIKEPDEKETLNIINSIIKNFENYHGVTYEKEAIENVISLSSQYLTNRKFPDKAIDLIDIAGAQKKQQ
EINTKIVNAEDIKNTTDEFFGIKVKLNLTEEIAYLKEETINIKEKIIGQESAIDEIIIEMVKTKLGINNNIQPLTSILLI
GSSGSGKTILSKTISKIMIKDQNSILQLDMSDYREETSISKLIGTNPGYAGYTDGGILINRLKYNPRAFIIFENIEYAHN
SVMSIIEQILENGELIDNKEDKISFKNSIIVLSTSIGSKILLGKGILGFNKTDNNIDIKSTINNELKTKLKLSLIDKIQK
KIILNVLTEKDLSIIYDNYCKELTQKFSLKNIQIEIDDSLKNHIIKKYYDKNSGARSILNAVKENIEEKIINQIFHNPNI
NLIKIYLEQNNIKIKQKEILCSKK
>Mature_744_residues
MNLVEISSREVARKNKNREVSSWHLLMSILLIHPKKSEIKNIETKTLKNIKQDTLYEIEKLEKVLIGTNEIVIPKISREI
FTLIDQTKKEFKSKTLIGIKEIFYQILKTKKLLKKYKLNKLSFNFDEDNIITSIDKIRLIETYKEFEDETRQNDYFEINK
YVKNLTTLAKEKKLDPLIGREKEIQSLISILERRNKNSTILIGEPGIGKTAIVEGLAIKIANKEIKSQLQNKIILQIETS
DLVSGTKYRGEFEERLNNIIKSIKNNKNIIIFIDEIHTLIGAGNSEGSIDAANILKPILSRSAIQIIGATTYDEYRKHIS
KDKAFTRRFQTISIKEPDEKETLNIINSIIKNFENYHGVTYEKEAIENVISLSSQYLTNRKFPDKAIDLIDIAGAQKKQQ
EINTKIVNAEDIKNTTDEFFGIKVKLNLTEEIAYLKEETINIKEKIIGQESAIDEIIIEMVKTKLGINNNIQPLTSILLI
GSSGSGKTILSKTISKIMIKDQNSILQLDMSDYREETSISKLIGTNPGYAGYTDGGILINRLKYNPRAFIIFENIEYAHN
SVMSIIEQILENGELIDNKEDKISFKNSIIVLSTSIGSKILLGKGILGFNKTDNNIDIKSTINNELKTKLKLSLIDKIQK
KIILNVLTEKDLSIIYDNYCKELTQKFSLKNIQIEIDDSLKNHIIKKYYDKNSGARSILNAVKENIEEKIINQIFHNPNI
NLIKIYLEQNNIKIKQKEILCSKK

Specific function: Bacterial hemolysins are exotoxins that attack blood cell membranes and cause cell rupture by mechanisms not clearly defined [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 UVR domain [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=158, Percent_Identity=37.9746835443038, Blast_Score=120, Evalue=6e-27,
Organism=Escherichia coli, GI1787109, Length=726, Percent_Identity=32.2314049586777, Blast_Score=374, Evalue=1e-104,
Organism=Escherichia coli, GI1788943, Length=273, Percent_Identity=44.3223443223443, Blast_Score=255, Evalue=6e-69,
Organism=Saccharomyces cerevisiae, GI6320464, Length=256, Percent_Identity=44.921875, Blast_Score=228, Evalue=4e-60,
Organism=Saccharomyces cerevisiae, GI6323002, Length=239, Percent_Identity=45.6066945606695, Blast_Score=225, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150
- InterPro:   IPR001943 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]

EC number: NA

Molecular weight: Translated: 85235; Mature: 85235

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVEISSREVARKNKNREVSSWHLLMSILLIHPKKSEIKNIETKTLKNIKQDTLYEIEK
CCCEECCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
LEKVLIGTNEIVIPKISREIFTLIDQTKKEFKSKTLIGIKEIFYQILKTKKLLKKYKLNK
HHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSFNFDEDNIITSIDKIRLIETYKEFEDETRQNDYFEINKYVKNLTTLAKEKKLDPLIGR
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
EKEIQSLISILERRNKNSTILIGEPGIGKTAIVEGLAIKIANKEIKSQLQNKIILQIETS
HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHEEEHHHHHHHHHCCCEEEEEECC
DLVSGTKYRGEFEERLNNIIKSIKNNKNIIIFIDEIHTLIGAGNSEGSIDAANILKPILS
HHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHC
RSAIQIIGATTYDEYRKHISKDKAFTRRFQTISIKEPDEKETLNIINSIIKNFENYHGVT
CCHHHEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
YEKEAIENVISLSSQYLTNRKFPDKAIDLIDIAGAQKKQQEINTKIVNAEDIKNTTDEFF
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHEECCHHHHCCCCHHHE
GIKVKLNLTEEIAYLKEETINIKEKIIGQESAIDEIIIEMVKTKLGINNNIQPLTSILLI
EEEEEEECHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEE
GSSGSGKTILSKTISKIMIKDQNSILQLDMSDYREETSISKLIGTNPGYAGYTDGGILIN
ECCCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
RLKYNPRAFIIFENIEYAHNSVMSIIEQILENGELIDNKEDKISFKNSIIVLSTSIGSKI
EEECCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCEE
LLGKGILGFNKTDNNIDIKSTINNELKTKLKLSLIDKIQKKIILNVLTEKDLSIIYDNYC
EEECCCCCCCCCCCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KELTQKFSLKNIQIEIDDSLKNHIIKKYYDKNSGARSILNAVKENIEEKIINQIFHNPNI
HHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
NLIKIYLEQNNIKIKQKEILCSKK
EEEEEEEECCCEEEEHHHHCCCCC
>Mature Secondary Structure
MNLVEISSREVARKNKNREVSSWHLLMSILLIHPKKSEIKNIETKTLKNIKQDTLYEIEK
CCCEECCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
LEKVLIGTNEIVIPKISREIFTLIDQTKKEFKSKTLIGIKEIFYQILKTKKLLKKYKLNK
HHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSFNFDEDNIITSIDKIRLIETYKEFEDETRQNDYFEINKYVKNLTTLAKEKKLDPLIGR
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
EKEIQSLISILERRNKNSTILIGEPGIGKTAIVEGLAIKIANKEIKSQLQNKIILQIETS
HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHEEEHHHHHHHHHCCCEEEEEECC
DLVSGTKYRGEFEERLNNIIKSIKNNKNIIIFIDEIHTLIGAGNSEGSIDAANILKPILS
HHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHC
RSAIQIIGATTYDEYRKHISKDKAFTRRFQTISIKEPDEKETLNIINSIIKNFENYHGVT
CCHHHEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
YEKEAIENVISLSSQYLTNRKFPDKAIDLIDIAGAQKKQQEINTKIVNAEDIKNTTDEFF
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHEECCHHHHCCCCHHHE
GIKVKLNLTEEIAYLKEETINIKEKIIGQESAIDEIIIEMVKTKLGINNNIQPLTSILLI
EEEEEEECHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEE
GSSGSGKTILSKTISKIMIKDQNSILQLDMSDYREETSISKLIGTNPGYAGYTDGGILIN
ECCCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
RLKYNPRAFIIFENIEYAHNSVMSIIEQILENGELIDNKEDKISFKNSIIVLSTSIGSKI
EEECCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCEE
LLGKGILGFNKTDNNIDIKSTINNELKTKLKLSLIDKIQKKIILNVLTEKDLSIIYDNYC
EEECCCCCCCCCCCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KELTQKFSLKNIQIEIDDSLKNHIIKKYYDKNSGARSILNAVKENIEEKIINQIFHNPNI
HHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
NLIKIYLEQNNIKIKQKEILCSKK
EEEEEEEECCCEEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7968456 [H]