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The map label for this gene is yomI [H]

Identifier: 203284180

GI number: 203284180

Start: 284503

End: 286653

Strand: Reverse

Name: yomI [H]

Synonym: BDU_262

Alternate gene names: 203284180

Gene position: 286653-284503 (Counterclockwise)

Preceding gene: 203284181

Following gene: 203284179

Centisome position: 30.77

GC content: 25.48

Gene sequence:

>2151_bases
GTGAAAAAAGTAATGTTTAAGAAAATTATTTATTTGTTTTTATTGAATTTATTATCTTGTTCATTTGTGAAAGAATCTTT
AAGTAGCAATATTTTAAAAAAAAGTATCAATAGTTTTGATTTAAATCATTTAAATTGGTTGTGGAATTTTGACTATGTAG
GACAAAATTTTGATAAATATTTTGGTATAGATTCAGATTCTTATGTATATGTTGCTTATCTTTTCAAAAAAATAGGGTAT
GATGAAAAATTTAGAGAATATATGCACAAAGCAATAAATAGTAATAATAATATTGCATCTCAATTTGCTGGTGTAAAACT
TCTTGAATATTATAATTCTAGAAGAGAATATTATGAGGCAGAACTTGTTGGTCGAAAACTTTATAACAAATATAATGATA
ATAAATTCATTATATTAGGATATTTTAAAAGTCTTTATTGGCAGAAAAAGAATAATGAAGCTCTTTTAGTTTTAAATAAG
CTAGAAAAAATGGATTTCATGCAGGCACAAGAAAATGAAAATCTTTTATTTAAAGCAGTGCTTTATTTTAATATTTCTGA
TATTAATACGTCATTAATTTATTTCAAGAAATTGTTTGAGAATTTGCCGGCAGAATATTTGCATGTAAGGGCTCATGATT
ATCTTGTTCTTGAAGGGAAAGATAATCTTTTAAATTCAACTTTTTTAAGTCTTGTTAAATTTAAATCTTTGGTTGCTAAT
GGTGATTTTAAAGGTGCTGTTAATATATTAGATGATAGTTTTAAGAAGTATTATAATAATTTTATTTTTTTAAATGATGT
TTATAAGACTTTTGTAAGTTTAGGTTATATTAACAAGGCATTATCTTTTTTTAGTAATTTAGATAGTGTTTATAAAGATT
ATTATTTGGGGCTCCTTAATTTAAAATTAAAAAAAGATGTAGGTTTTGTGACAATACTTAAATATTTGGAAAATTCTTCT
ATTATAAATGAACCTTATAGATTAGAAATGCTTAATGAAATTTTTAGAAATTTCATATTTATGAAAAATACAAGAAATTA
TTTTTCTAAAAACATAGCTAATTTTTATACAAGTAAAGATAAGGGTAATTTTGCTTTTATTAAGGTATTAGATGAATATA
TTTTAGAAGCTGTACAACTTGGAGATTATGATAATTTATATTTACTATATTATAATGGTCAAAATGTTATTGACAATGCT
GTTTTAGCAAGGCTTGCTTTTCTTAATGCTAGACTTATATATCACAAATTTATTAAATCTCAGTCAGTCGGTGAGTATAG
AGAGCTTTTGCGTTCTGCTATTAAATATGATCAAATATCTTATGCATCGTTTATGAGTAGGTATTTGCTTGATCAAAATA
TTAATGATTTGTTTGAAAATGCTTTGGATATAAATTATGATCAGTCCGATTATGAAAGGTTTTTGGAAGGGTTTTTAAAA
TTTAATTTGCATTCTTATGTTAGTGTGTTTGTTGCCAATGATTTTAAAAATGGTTATAGATTTTCTCCTAATTTTTACCG
TAATCTTTACGATGAATTTGTGAAACATGAATATTATTATGAATCTATACTTGCTATTAATTACCTTGTAAGGCAAGATT
TTTCGGCTTTAAATAAAGATGATTATAAGCGTCTCTATCCATGTTTGTACACGGCTTTAATTAAATCTTGGTCAGGGAAA
AGGGAACTTGAGTCGAGTCTTGTATTTTCTTTAATAAAAGCTGAGAGTAGTTTTAAAAGAGATGCTGTATCTAAACCTGG
TGCTATCGGACTTATGCAAATTATGCCTGCAACATCAGCTGATGTATCTAGAGAAATCAAATATTATAAATACTATTCTT
ATGATTTGAAACAGCCAAAGGATAATGTTATTATTGGGACTCATTATTTACGTAAAAGAATAGACATGTTGGAAGATGTG
TATAAGGCTCTTGCATCTTATAATGGTGGTATTGGAAATGTTAGGAAATGGGAAAAAGATTATGGGCATTTGCCCAAAGA
AATTTTTATCGAAGCTATTCCTTTTGGACAAACTAGGAATTATATTAAAAAAATATTAGTTTATTCTGTATTATATGATG
CTTTATATGAAAGAAAGGGAATGGATTTTATTATAGAGTATATTATGGGTAAATTTTCCAAACGTTTTTAG

Upstream 100 bases:

>100_bases
ATATTTTTTTCATTGTTTTTGATTTTTTCTAAAATATTAAATCCTAAAAATTTTACAATTTCTTATTGTTCTTTTTATAA
AGAAGAAAAAATTACTAGAT

Downstream 100 bases:

>100_bases
GTTGTGAAGTTAAATGGATAATATTTTAAGGGTTATTATTTTAGGTTTTGTTCAAGGCATTTCTGAGTTTTTGCCTATAT
CTAGTTCAGGCCATTTGTTA

Product: hypothetical protein

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKYFGIDSDSYVYVAYLFKKIGY
DEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEAELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNK
LEKMDFMQAQENENLLFKAVLYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN
GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLNLKLKKDVGFVTILKYLENSS
IINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKDKGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNA
VLARLAFLNARLIYHKFIKSQSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK
FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKDDYKRLYPCLYTALIKSWSGK
RELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSADVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDV
YKALASYNGGIGNVRKWEKDYGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF

Sequences:

>Translated_716_residues
MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKYFGIDSDSYVYVAYLFKKIGY
DEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEAELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNK
LEKMDFMQAQENENLLFKAVLYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN
GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLNLKLKKDVGFVTILKYLENSS
IINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKDKGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNA
VLARLAFLNARLIYHKFIKSQSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK
FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKDDYKRLYPCLYTALIKSWSGK
RELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSADVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDV
YKALASYNGGIGNVRKWEKDYGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF
>Mature_716_residues
MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKYFGIDSDSYVYVAYLFKKIGY
DEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEAELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNK
LEKMDFMQAQENENLLFKAVLYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN
GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLNLKLKKDVGFVTILKYLENSS
IINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKDKGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNA
VLARLAFLNARLIYHKFIKSQSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK
FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKDDYKRLYPCLYTALIKSWSGK
RELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSADVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDV
YKALASYNGGIGNVRKWEKDYGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=163, Percent_Identity=32.5153374233129, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 84936; Mature: 84936

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHHHH
FGIDSDSYVYVAYLFKKIGYDEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEA
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNKLEKMDFMQAQENENLLFKAV
HHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEE
LYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN
EEEEECCCCHHHHHHHHHHHHCCHHHEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCC
GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLN
CCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKLKKDVGFVTILKYLENSSIINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKD
EEEHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCC
KGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNAVLARLAFLNARLIYHKFIKS
CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
QSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DYKRLYPCLYTALIKSWSGKRELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCC
DVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDVYKALASYNGGIGNVRKWEKD
HHHHHHHHHEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
YGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF
HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHHHH
FGIDSDSYVYVAYLFKKIGYDEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEA
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNKLEKMDFMQAQENENLLFKAV
HHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEE
LYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN
EEEEECCCCHHHHHHHHHHHHCCHHHEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCC
GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLN
CCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKLKKDVGFVTILKYLENSSIINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKD
EEEHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCC
KGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNAVLARLAFLNARLIYHKFIKS
CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
QSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DYKRLYPCLYTALIKSWSGKRELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCC
DVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDVYKALASYNGGIGNVRKWEKD
HHHHHHHHHEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
YGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF
HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]