| Definition | Borrelia duttonii Ly, complete genome. |
|---|---|
| Accession | NC_011229 |
| Length | 931,674 |
Click here to switch to the map view.
The map label for this gene is 203284165
Identifier: 203284165
GI number: 203284165
Start: 264066
End: 264617
Strand: Reverse
Name: 203284165
Synonym: BDU_246
Alternate gene names: NA
Gene position: 264617-264066 (Counterclockwise)
Preceding gene: 203284166
Following gene: 203284164
Centisome position: 28.4
GC content: 30.98
Gene sequence:
>552_bases ATGTTAAATTTATTGGTTATTAAAAGAGATAGAAAGGTTGGATCGTCTTTATTGAGTGATGAAGTTAAGACAATTGTTGG GAAAGGCGATTTTTTTAAAGGAGAATTGGTTTCAAGTAATTTTATTCGAGTTGATGGTGATTTTTTGGGTACTATTAATT CTACTAAAAGGGTTGTAATTGGGGATACAGGGCGGGTTAAATCAAATATTAATGCAAATGAGGTTGTTGTTTCTGGGATA GTGCTTGGCAATGTGCATGCTAATAATAAAATTAAAGTTTTTCAGTCAGGTTGCATTATTGGTAATATTTCATGCAAGTC AATTGAAGTTGAAGAGGGTGCAATTATTGATGGATATATGAATGTTGGGATAGGAAGTCTTAATTTTTCCGAGAAAGATG TATTGATTTATACAGGATCTTATAAAGTTGATGAAAATATTTTGATTGAGGTTAATAAGGGAATGAAATGGGAAAATCGA AACAAGGAGACTTGTGTTCGTGAAAATGATAAATATTTATTTAATGATGTGAGAAAGATGGATGAAGATTGA
Upstream 100 bases:
>100_bases ATATTCTACAGGTCCACATCTTCATTATGAAGTTCGCATAGGATCTCAAGTTGTAAATCCTGATATGTATTTAAATTTGG CTACGGGGGCTTCTAAATAG
Downstream 100 bases:
>100_bases TAATTTAGTTTCAGGTGCTTTTAATCTTGATTTAAAAGACTATAAGGCTTCTAAGAAAAAAATTAATTCTAGTAAAACAA ATATTTTTTCTGCAATATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MLNLLVIKRDRKVGSSLLSDEVKTIVGKGDFFKGELVSSNFIRVDGDFLGTINSTKRVVIGDTGRVKSNINANEVVVSGI VLGNVHANNKIKVFQSGCIIGNISCKSIEVEEGAIIDGYMNVGIGSLNFSEKDVLIYTGSYKVDENILIEVNKGMKWENR NKETCVRENDKYLFNDVRKMDED
Sequences:
>Translated_183_residues MLNLLVIKRDRKVGSSLLSDEVKTIVGKGDFFKGELVSSNFIRVDGDFLGTINSTKRVVIGDTGRVKSNINANEVVVSGI VLGNVHANNKIKVFQSGCIIGNISCKSIEVEEGAIIDGYMNVGIGSLNFSEKDVLIYTGSYKVDENILIEVNKGMKWENR NKETCVRENDKYLFNDVRKMDED >Mature_183_residues MLNLLVIKRDRKVGSSLLSDEVKTIVGKGDFFKGELVSSNFIRVDGDFLGTINSTKRVVIGDTGRVKSNINANEVVVSGI VLGNVHANNKIKVFQSGCIIGNISCKSIEVEEGAIIDGYMNVGIGSLNFSEKDVLIYTGSYKVDENILIEVNKGMKWENR NKETCVRENDKYLFNDVRKMDED
Specific function: Unknown
COG id: COG1664
COG function: function code M; Integral membrane protein CcmA involved in cell shape determination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20285; Mature: 20285
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLLVIKRDRKVGSSLLSDEVKTIVGKGDFFKGELVSSNFIRVDGDFLGTINSTKRVVI CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEECEEECCCEEEECCCEEEECCCCCEEEE GDTGRVKSNINANEVVVSGIVLGNVHANNKIKVFQSGCIIGNISCKSIEVEEGAIIDGYM ECCCCEECCCCCCCEEEEEEEEEEEECCCEEEEEECCEEEECCEEEEEEECCCEEEECEE NVGIGSLNFSEKDVLIYTGSYKVDENILIEVNKGMKWENRNKETCVRENDKYLFNDVRKM ECCEECCCCCCCEEEEEECCEEECCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHC DED CCC >Mature Secondary Structure MLNLLVIKRDRKVGSSLLSDEVKTIVGKGDFFKGELVSSNFIRVDGDFLGTINSTKRVVI CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEECEEECCCEEEECCCEEEECCCCCEEEE GDTGRVKSNINANEVVVSGIVLGNVHANNKIKVFQSGCIIGNISCKSIEVEEGAIIDGYM ECCCCEECCCCCCCEEEEEEEEEEEECCCEEEEEECCEEEECCEEEEEEECCCEEEECEE NVGIGSLNFSEKDVLIYTGSYKVDENILIEVNKGMKWENRNKETCVRENDKYLFNDVRKM ECCEECCCCCCCEEEEEECCEEECCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHC DED CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA