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The map label for this gene is ruvB [H]

Identifier: 203283952

GI number: 203283952

Start: 33083

End: 34105

Strand: Reverse

Name: ruvB [H]

Synonym: BDU_28

Alternate gene names: 203283952

Gene position: 34105-33083 (Counterclockwise)

Preceding gene: 203283953

Following gene: 203283951

Centisome position: 3.66

GC content: 32.45

Gene sequence:

>1023_bases
GTGGATTTGGGCTTTTTAAATTCTGAAAAAAATTTTCTTTATGACAATAATGAAGATGATCTTAGACCAGAATTTCTTAA
AGATTTTTCAGGGCAATCTCATATTAAAGATAATTTAGATATTTTCATCAAAGCATCTAGAGACAGGAATGAGGCGCTTG
ATCATGTGTTTTTAAGTGGTCCTCCGGGACTTGGAAAGACTACTTTGGCTAGTATTATTGCCCTTGAAATGAATACTACG
ATTAAAATAACTTCAGCACCAGCTTTTGAGAAACCAAAAGATATTGTTGGAATTTTAATGACCCTTAATGATAAGAGTGT
TTTATTTATTGATGAAATACATAGACTTAAACCTGCAATAGAGGAAATGCTTTATATTGCAATGGAAGATTATAAGATAG
ATTGTATAGTTGGCCAAGGTGCTGTTGCAAGGACTGTAAGAATGTCAATTCCTAAGTTTACTTTAATTGGGGCTACTACA
AAGCCAGGAAAAGTAGCGTCACCCTTGTATGCAAGATTTGGAATTGTATTTAGATTTGATCTTTATAATGAGGATGAGCT
TTCAAAAATTATAAAAAGAAGTGCTTTTATTTTAAATGTTAAATTGAATGATAAAGCTGCCTTGCTTCTTGCAAAAAGTT
CAAGAGGAACTCCTCGTATGGCAAATAAACTTTTAAGGAGAATGAGAGATTTTGCTCAGGTTGGTGGTTATGATTTAATT
ACAGAAGATGTTGTGACTGCTGGACTTGAGATGTTGAAAATTGATCATGAGGGACTTGATGAACAAGATAGGAATATTTT
GAAAAATTTGATATTAAAATTTAGAGGTGGTCCTGTTGGAATTGAAACCTTAGCAATTGCTGTTGGAGAGACAGCAGATT
CTCTTGAAGATTTTTATGAACCTTATCTTGTTTTAAGGGGTTTTATTGAGAGAACTAATAGAGGACGCAGAGCTACTGAT
TTTGCGTATTTGCATTTAAATTTAAACAAAAATAATCAAACCATTTTTGATATTAGTAGGTAG

Upstream 100 bases:

>100_bases
CAAGAACAATTTTTATTTACAGAGACTTTAAAAAGACTTTCAGTTTAGATTTTATTTTAGAGGTATATGATTAATTTTGA
GTAAAAAGGGTGAAATTTAA

Downstream 100 bases:

>100_bases
TATGGAGACTAAGGAATTTTATTTTGATTTACCACATCACTTAATAGCACAGTATCCAAGTGAAAGAAGAGGTTTGGCAA
AATTAATGGTTTTGGATTCT

Product: Holliday junction DNA helicase RuvB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT
IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATT
KPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI
TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLVLRGFIERTNRGRRATD
FAYLHLNLNKNNQTIFDISR

Sequences:

>Translated_340_residues
MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT
IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATT
KPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI
TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLVLRGFIERTNRGRRATD
FAYLHLNLNKNNQTIFDISR
>Mature_340_residues
MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSGPPGLGKTTLASIIALEMNTT
IKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAIEEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATT
KPGKVASPLYARFGIVFRFDLYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI
TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYEPYLVLRGFIERTNRGRRATD
FAYLHLNLNKNNQTIFDISR

Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday

COG id: COG2255

COG function: function code L; Holliday junction resolvasome, helicase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ruvB family [H]

Homologues:

Organism=Escherichia coli, GI1788167, Length=309, Percent_Identity=48.5436893203884, Blast_Score=322, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004605
- InterPro:   IPR008823
- InterPro:   IPR008824
- InterPro:   IPR011991
- ProDom:   PD005323 [H]

Pfam domain/function: PF05491 RuvB_C; PF05496 RuvB_N [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 38325; Mature: 38325

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSG
CCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCEEEECC
PPGLGKTTLASIIALEMNTTIKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAI
CCCCCHHHHHHHHEEEECCEEEEECCCCCCCCHHHEEEEEEECCCCEEEHHHHHHHHHHH
EEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFD
HHHHHHHEECEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHEEEEEEEE
LYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI
CCCHHHHHHHHHCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYE
HHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCHHHHHHHHH
PYLVLRGFIERTNRGRRATDFAYLHLNLNKNNQTIFDISR
HHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEECC
>Mature Secondary Structure
MDLGFLNSEKNFLYDNNEDDLRPEFLKDFSGQSHIKDNLDIFIKASRDRNEALDHVFLSG
CCCCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCEEEECC
PPGLGKTTLASIIALEMNTTIKITSAPAFEKPKDIVGILMTLNDKSVLFIDEIHRLKPAI
CCCCCHHHHHHHHEEEECCEEEEECCCCCCCCHHHEEEEEEECCCCEEEHHHHHHHHHHH
EEMLYIAMEDYKIDCIVGQGAVARTVRMSIPKFTLIGATTKPGKVASPLYARFGIVFRFD
HHHHHHHEECEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHEEEEEEEE
LYNEDELSKIIKRSAFILNVKLNDKAALLLAKSSRGTPRMANKLLRRMRDFAQVGGYDLI
CCCHHHHHHHHHCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
TEDVVTAGLEMLKIDHEGLDEQDRNILKNLILKFRGGPVGIETLAIAVGETADSLEDFYE
HHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCHHHHHHHHH
PYLVLRGFIERTNRGRRATDFAYLHLNLNKNNQTIFDISR
HHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA