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The map label for this gene is rps28e

Identifier: 20094881

GI number: 20094881

Start: 1477287

End: 1477511

Strand: Reverse

Name: rps28e

Synonym: MK1445

Alternate gene names: 20094881

Gene position: 1477511-1477287 (Counterclockwise)

Preceding gene: 20094893

Following gene: 20094880

Centisome position: 87.17

GC content: 58.67

Gene sequence:

>225_bases
ATGGTAGAGTGCGACTACGACCCGACAGAGGACGCAACACCCGCGGAAGTCGTGGAGATCTTAGGGCGCACCGGAATGGC
CGGTGAGGTGACACAGGTGAAGGTCAGGATCCTGGAGGGACCGGACAAGGGTAGGATCATCACTAGAAACGTCAAAGGGC
CCGTTCGAGAAGGAGACATCCTACTGCTGAGGGAAACCGAGAGGGAGGCGCGACCGATCGAGTAA

Upstream 100 bases:

>100_bases
GCCGAACCCGCCCTTCACTTTAAGTCTTGTACCGCGTCCGAACCCCCGACGAAACTTCATAACGGGGCTCAGGGAAGGCC
TCGCCTAGGGGGTGGAAAAG

Downstream 100 bases:

>100_bases
GGGGGGCTCAGAATGCCCGATGTTCGGCGCTGTGACTTCTGCGGTCGGATCATTGAGCCAGGGACAGGAAAAATGTTCGT
CAAGAACGATGGCACGATCC

Product: 30S ribosomal protein S28e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MVECDYDPTEDATPAEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDILLLRETEREARPIE

Sequences:

>Translated_74_residues
MVECDYDPTEDATPAEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDILLLRETEREARPIE
>Mature_74_residues
MVECDYDPTEDATPAEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDILLLRETEREARPIE

Specific function: Unknown

COG id: COG2053

COG function: function code J; Ribosomal protein S28E/S33

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S28e family

Homologues:

Organism=Homo sapiens, GI4506715, Length=59, Percent_Identity=57.6271186440678, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17543286, Length=61, Percent_Identity=55.7377049180328, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323294, Length=68, Percent_Identity=57.3529411764706, Blast_Score=70, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6324741, Length=68, Percent_Identity=57.3529411764706, Blast_Score=69, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24651257, Length=59, Percent_Identity=66.1016949152542, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18858095, Length=59, Percent_Identity=61.0169491525424, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS28_METKA (Q8TVE7)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_614728.1
- ProteinModelPortal:   Q8TVE7
- SMR:   Q8TVE7
- GeneID:   1478040
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK1445
- NMPDR:   fig|190192.1.peg.1441
- HOGENOM:   HBG392125
- OMA:   GMHGEAS
- ProtClustDB:   PRK04007
- BioCyc:   MKAN190192:MK1445-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00292
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000289
- InterPro:   IPR022836
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10769
- ProDom:   PD005541

Pfam domain/function: PF01200 Ribosomal_S28e; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 8233; Mature: 8233

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00961 RIBOSOMAL_S28E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVECDYDPTEDATPAEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDI
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCE
LLLRETEREARPIE
EEEECCCCCCCCCC
>Mature Secondary Structure
MVECDYDPTEDATPAEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDI
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCE
LLLRETEREARPIE
EEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014