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The map label for this gene is 20094816

Identifier: 20094816

GI number: 20094816

Start: 1406873

End: 1407622

Strand: Reverse

Name: 20094816

Synonym: MK1380

Alternate gene names: NA

Gene position: 1407622-1406873 (Counterclockwise)

Preceding gene: 20094819

Following gene: 20094815

Centisome position: 83.05

GC content: 57.47

Gene sequence:

>750_bases
TTGAATCACCCGCGGGGAGTGATCTCGTTGCCGAGGAGCCTCGTGCTAAAAAGGATCGTCGGCGACATCGCCGCGTCGGA
GCACCCGGGGAAGGTAATGAGGAAGTGGCGGAAGGTGTTCCACGCTTCACAGGTCGAGGTCGCCAGGCGGATGGGCGTGT
CACCGTCGGTCATCAGTGAGTACGAAACTGGGAAGACTAAAGCCCCTCGGGTCGACACCGTGCGGAAGTTCGTGGAAGCA
CTTATAGAGATCGACGAGGAGCGCGGTGGTAACATCGTCTCCGCGCTCGAGAACGTCCTGTTCAGCGAGGAGTTACTAGT
CACCTTAATCGGCATCGGTGAGTTCCCCTACCCGAGAAAACTCGAAGAGGTCTATGAAGCAATCGAGGCGGAACCCGTGG
TCCATCACGGTAACGTGGATGTGTTCGGGTACACGGTGATCGACAGTGTGAAGACGATACTGGAGGTCCCCGCACGGTCC
CTCATTCGGGTGTACGGGGAGTGCCCGAACAGGGTATTGGTGTTCACGAGGATCGACCGAGGGCGCTCCCCGATGGTGGC
CATCAAGGCGGCGGGGGTCAAACCGAGCGCGGTGGTACTACATGGTATTGATAAAAGTGAGGTGGATGACATTGGAATCA
AGATCGCGGAGGTAGAGGGTATCAATCTGGCCACGACTACCGAGTCCATTTCGAGGATCTCGAAAAGGCTTAAGGAGCTT
ACCGAAGTTCAGCCGGGGGATCGTGGTTGA

Upstream 100 bases:

>100_bases
ACGCCGGAATCACCACCGAGACCTTTTGCGGCCGCTTCTTCCTCTCCCTGAACAGTGCCAGGGCGGTGAGTACTAACAGC
GTCAGTCCTCCGTCGAGCAC

Downstream 100 bases:

>100_bases
TACCTTCGGAGCGTGTCGGGATCGTCGGGTACGGTGCTTACGTTCCACGGTACCGGATTAAGGCGGAAGAGATCGCGGCC
GTTTGGGGAGATGACGTCGA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNHPRGVISLPRSLVLKRIVGDIAASEHPGKVMRKWRKVFHASQVEVARRMGVSPSVISEYETGKTKAPRVDTVRKFVEA
LIEIDEERGGNIVSALENVLFSEELLVTLIGIGEFPYPRKLEEVYEAIEAEPVVHHGNVDVFGYTVIDSVKTILEVPARS
LIRVYGECPNRVLVFTRIDRGRSPMVAIKAAGVKPSAVVLHGIDKSEVDDIGIKIAEVEGINLATTTESISRISKRLKEL
TEVQPGDRG

Sequences:

>Translated_249_residues
MNHPRGVISLPRSLVLKRIVGDIAASEHPGKVMRKWRKVFHASQVEVARRMGVSPSVISEYETGKTKAPRVDTVRKFVEA
LIEIDEERGGNIVSALENVLFSEELLVTLIGIGEFPYPRKLEEVYEAIEAEPVVHHGNVDVFGYTVIDSVKTILEVPARS
LIRVYGECPNRVLVFTRIDRGRSPMVAIKAAGVKPSAVVLHGIDKSEVDDIGIKIAEVEGINLATTTESISRISKRLKEL
TEVQPGDRG
>Mature_249_residues
MNHPRGVISLPRSLVLKRIVGDIAASEHPGKVMRKWRKVFHASQVEVARRMGVSPSVISEYETGKTKAPRVDTVRKFVEA
LIEIDEERGGNIVSALENVLFSEELLVTLIGIGEFPYPRKLEEVYEAIEAEPVVHHGNVDVFGYTVIDSVKTILEVPARS
LIRVYGECPNRVLVFTRIDRGRSPMVAIKAAGVKPSAVVLHGIDKSEVDDIGIKIAEVEGINLATTTESISRISKRLKEL
TEVQPGDRG

Specific function: Unknown

COG id: COG1709

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR017271
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 27481; Mature: 27481

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHPRGVISLPRSLVLKRIVGDIAASEHPGKVMRKWRKVFHASQVEVARRMGVSPSVISE
CCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YETGKTKAPRVDTVRKFVEALIEIDEERGGNIVSALENVLFSEELLVTLIGIGEFPYPRK
HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LEEVYEAIEAEPVVHHGNVDVFGYTVIDSVKTILEVPARSLIRVYGECPNRVLVFTRIDR
HHHHHHHHCCCCEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
GRSPMVAIKAAGVKPSAVVLHGIDKSEVDDIGIKIAEVEGINLATTTESISRISKRLKEL
CCCCEEEEEECCCCCCEEEEECCCHHHHHHHCEEEEEECCCEEEHHHHHHHHHHHHHHHH
TEVQPGDRG
HHCCCCCCC
>Mature Secondary Structure
MNHPRGVISLPRSLVLKRIVGDIAASEHPGKVMRKWRKVFHASQVEVARRMGVSPSVISE
CCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YETGKTKAPRVDTVRKFVEALIEIDEERGGNIVSALENVLFSEELLVTLIGIGEFPYPRK
HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LEEVYEAIEAEPVVHHGNVDVFGYTVIDSVKTILEVPARSLIRVYGECPNRVLVFTRIDR
HHHHHHHHCCCCEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
GRSPMVAIKAAGVKPSAVVLHGIDKSEVDDIGIKIAEVEGINLATTTESISRISKRLKEL
CCCCEEEEEECCCCCCEEEEECCCHHHHHHHCEEEEEECCCEEEHHHHHHHHHHHHHHHH
TEVQPGDRG
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]