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The map label for this gene is rpoH

Identifier: 20094126

GI number: 20094126

Start: 649995

End: 650273

Strand: Reverse

Name: rpoH

Synonym: MK0688

Alternate gene names: 20094126

Gene position: 650273-649995 (Counterclockwise)

Preceding gene: 20094127

Following gene: 20094125

Centisome position: 38.36

GC content: 62.37

Gene sequence:

>279_bases
ATGGCGGAGCGGTTGGATCCGGACGTGGTGTTGAACCACGTGCTCGTGCCGAAGCACGAGGTCATCGACGACGAGGAGGA
GATCGAGAAGATACTCGAGGAGCTCGGGGTGGAGAAGGACGACCTGCCGAGGATCCACACGAACGACCCCGTGGTCGTGG
CGCTGAGCGAGAAACTCGGCAAGCGGATCAAGCCCGGGAGTCTGGTTAAAATCGTCCGAGACAGCCCGACCGCGGGTAAG
ACCGTGGTGTACCGGGTCGTGACCAATCCGCCCGAGTAG

Upstream 100 bases:

>100_bases
GCGGCCGCCGTGCGGGAGGTCTTCCTGGGGTTCTCGGAGGCCTCGTGTGTGGACTGCGGTCTGTGCGTGGAAACGTGCCC
CTTCGGGTGGGGGAAGGGGC

Downstream 100 bases:

>100_bases
GGGGGAACCCGATGGCCGAACCCGTCAAGTCTCTGAGTGAGGAGGATTATTTGGCGTTATTGGAGGGTTATTTACGTAGA
AACGAGGAACTCCTGGGCGA

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MAERLDPDVVLNHVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLGKRIKPGSLVKIVRDSPTAGK
TVVYRVVTNPPE

Sequences:

>Translated_92_residues
MAERLDPDVVLNHVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLGKRIKPGSLVKIVRDSPTAGK
TVVYRVVTNPPE
>Mature_91_residues
AERLDPDVVLNHVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLGKRIKPGSLVKIVRDSPTAGKT
VVYRVVTNPPE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOH_METKA (Q8TXI5)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613973.1
- ProteinModelPortal:   Q8TXI5
- SMR:   Q8TXI5
- GeneID:   1476789
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0688
- NMPDR:   fig|190192.1.peg.686
- HOGENOM:   HBG496846
- OMA:   PVEDEDK
- ProtClustDB:   PRK09570
- BioCyc:   MKAN190192:MK0688-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00025
- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- Gene3D:   G3DSA:3.90.940.20
- ProDom:   PD005155

Pfam domain/function: PF01191 RNA_pol_Rpb5_C; SSF55287 RNApol_RPB5_like

EC number: =2.7.7.6

Molecular weight: Translated: 10282; Mature: 10151

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERLDPDVVLNHVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLG
CCCCCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECHHCC
KRIKPGSLVKIVRDSPTAGKTVVYRVVTNPPE
CCCCCCCEEEEECCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
AERLDPDVVLNHVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLG
CCCCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECHHCC
KRIKPGSLVKIVRDSPTAGKTVVYRVVTNPPE
CCCCCCCEEEEECCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014