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The map label for this gene is 20093951

Identifier: 20093951

GI number: 20093951

Start: 477452

End: 478060

Strand: Reverse

Name: 20093951

Synonym: MK0513

Alternate gene names: NA

Gene position: 478060-477452 (Counterclockwise)

Preceding gene: 20093952

Following gene: 20093950

Centisome position: 28.2

GC content: 60.59

Gene sequence:

>609_bases
TTGGCGGAGCTGGCCGATGAATTCTACGAGAGCGCCGAGCGCGTGAAAATCCCCAAAGATCGTATCGGAGTGTTGATAGG
CAAGGATGGCGAGACCAAGCGTTACATCGAAGAAAAGACGGGAGTGGAACTGCGCATAGATAGCAAGACGGGCGAGGTCG
AGATCCGTCCCACCGAGCGTGTCAAGGATCCGCTCGATCTCATCAAAGCCAAAGAATGTGTGTTGGCCATAGGTCGAGGG
TTCTCCCCGGAGCGTGCGTTCCGACTCCTGAGGGAGGAAGACGCGAGTCTCGAAGTGATCGATCTGTACGAGCTCGTCGG
CCGCAACCCGAAGGCGTTGGAGCGGCAGAGGGCCAGGATCATCGGTCGAGAGGGGCGCACGCGGCAGCTTATCGAGGAGC
TCAGCGGTGCCGACGTGTCCATCCGTGGCAAGACGGTGGCCCTTATCGGAACGCCCAGACAGCTTCAGATCGCGAGGAAG
GCGATCGAAATGCTCGCCTCGGGTGCCCCGCACGGACGCGTGTACCGGTTCCTCGAGGACCAGCGTCGTAAGATGAAGCG
CGAGAAGCTGCGCCTGTGGAAGGACTCGGAGCCCCCCGACATCCTCTAA

Upstream 100 bases:

>100_bases
TTGATACGTGACTTGCGAAACCTCATCCGATTCTTCGAGCGCTTAAGTGTCGACACCCCCACGTTAGAGGAGGCCCTCGA
GTACGTCCGGGGGTGAGCAC

Downstream 100 bases:

>100_bases
CACCTCGCCTCTCAGAGCACCCGAGGGAACTACAGGATGTCCGAAGCCCTACAACGCCTACGTGAGTTCGCGAAACAGGT
CCTGAAGTGCGTGGAGAAGG

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAELADEFYESAERVKIPKDRIGVLIGKDGETKRYIEEKTGVELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRG
FSPERAFRLLREEDASLEVIDLYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARK
AIEMLASGAPHGRVYRFLEDQRRKMKREKLRLWKDSEPPDIL

Sequences:

>Translated_202_residues
MAELADEFYESAERVKIPKDRIGVLIGKDGETKRYIEEKTGVELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRG
FSPERAFRLLREEDASLEVIDLYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARK
AIEMLASGAPHGRVYRFLEDQRRKMKREKLRLWKDSEPPDIL
>Mature_201_residues
AELADEFYESAERVKIPKDRIGVLIGKDGETKRYIEEKTGVELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRGF
SPERAFRLLREEDASLEVIDLYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARKA
IEMLASGAPHGRVYRFLEDQRRKMKREKLRLWKDSEPPDIL

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Homo sapiens, GI10047140, Length=168, Percent_Identity=30.3571428571429, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324720, Length=178, Percent_Identity=25.2808988764045, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 23146; Mature: 23015

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELADEFYESAERVKIPKDRIGVLIGKDGETKRYIEEKTGVELRIDSKTGEVEIRPTER
CCHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHCCEEEEECCCCCEEEECCHHH
VKDPLDLIKAKECVLAIGRGFSPERAFRLLREEDASLEVIDLYELVGRNPKALERQRARI
HHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH
IGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARKAIEMLASGAPHGRVYRFLED
HCCCCCHHHHHHHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
QRRKMKREKLRLWKDSEPPDIL
HHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AELADEFYESAERVKIPKDRIGVLIGKDGETKRYIEEKTGVELRIDSKTGEVEIRPTER
CHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHCCEEEEECCCCCEEEECCHHH
VKDPLDLIKAKECVLAIGRGFSPERAFRLLREEDASLEVIDLYELVGRNPKALERQRARI
HHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH
IGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARKAIEMLASGAPHGRVYRFLED
HCCCCCHHHHHHHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
QRRKMKREKLRLWKDSEPPDIL
HHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]