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The map label for this gene is rpl10e

Identifier: 20093691

GI number: 20093691

Start: 241914

End: 242435

Strand: Direct

Name: rpl10e

Synonym: MK0251

Alternate gene names: 20093691

Gene position: 241914-242435 (Clockwise)

Preceding gene: 20093685

Following gene: 20093692

Centisome position: 14.27

GC content: 63.6

Gene sequence:

>522_bases
ATGGTGAACCGTCCGGCCCGGATCTACCGGGAGTGGAAGGGTCCGGCGTACACGCGAAGGGAATACATCAAGGGAGTCCC
GGACCCAAAAATCCAGCAGTTCGACATGGGGAATCCGGCGGGTGACTTCGACGTAGAGGTATCACTGGTGGCCAGGGAAC
GCGCCCAGGTCACGCACAACGCGCTCGAGGCGGCCCGTGTCGCCGCGAACCGTTACCTGACCAAGACCGTGGGTAGGCAG
AACTACCACCTGAAGATCCGAGTGTACCCCCACCACGTTCTGCGCGAGAACCCACTGGCCACGGGAGCCGGAGCGGACCG
AGTTCAGGAGGGAATGCGACTGGCCTTCGGGAAGCCGATCGGTACGGCGGCCAGGGTGCGTGAGGGTCAGCGCGTGGTTA
CGGTCCGGATCGACCCGGAGAACTTCGAGCACGCCAAGGAGGCCCTGCGCCGCGCGGGCATGAAGTTCCCGTTCCCGTTC
ACCATAGTGGTCGACAAGGGTGAAGAACTGGTTCAGGACTGA

Upstream 100 bases:

>100_bases
GGGTCGCGATGGCGCTAGCACGCATACGATCATCCCTGAGCGTAACAGGCACGTTACCGTTTTAAAATCTCTACGAAGCG
GGTGGCGGGGGTGGGTAGCG

Downstream 100 bases:

>100_bases
TGCGATACCGATCCGTGCTGAGGGGGGCCCACCGTGAAGTACGTCCGGTGGTTCGAGGAGATATCGAAGGATGACGTCGA
CGTCGCCGGAGGCAAGGGCG

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMGNPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQ
NYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPF
TIVVDKGEELVQD

Sequences:

>Translated_173_residues
MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMGNPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQ
NYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPF
TIVVDKGEELVQD
>Mature_173_residues
MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMGNPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQ
NYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPF
TIVVDKGEELVQD

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI18152783, Length=160, Percent_Identity=46.875, Blast_Score=152, Evalue=1e-37,
Organism=Homo sapiens, GI223890243, Length=160, Percent_Identity=46.25, Blast_Score=151, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17533037, Length=160, Percent_Identity=45.625, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6323104, Length=169, Percent_Identity=46.1538461538462, Blast_Score=146, Evalue=1e-36,
Organism=Drosophila melanogaster, GI221513696, Length=169, Percent_Identity=46.7455621301775, Blast_Score=150, Evalue=3e-37,
Organism=Drosophila melanogaster, GI221513692, Length=169, Percent_Identity=46.7455621301775, Blast_Score=150, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_METKA (Q8TYP2)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613538.1
- ProteinModelPortal:   Q8TYP2
- SMR:   Q8TYP2
- GeneID:   1477554
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0251
- NMPDR:   fig|190192.1.peg.251
- HOGENOM:   HBG512729
- OMA:   YTRREYI
- ProtClustDB:   PRK04199
- BioCyc:   MKAN190192:MK0251-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590
- TIGRFAMs:   TIGR00279

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 19648; Mature: 19648

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMGNPAGDFDVEVSLVARERAQVTHN
CCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCEEEEEEEHHHHHHHHHH
ALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPI
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
GTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDKGEELVQD
CCHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCC
>Mature Secondary Structure
MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMGNPAGDFDVEVSLVARERAQVTHN
CCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCEEEEEEEHHHHHHHHHH
ALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPI
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
GTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDKGEELVQD
CCHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014