Click here to switch to the map view.

The map label for this gene is 20093500

Identifier: 20093500

GI number: 20093500

Start: 57457

End: 58047

Strand: Reverse

Name: 20093500

Synonym: MK0060

Alternate gene names: NA

Gene position: 58047-57457 (Counterclockwise)

Preceding gene: 20093501

Following gene: 20093499

Centisome position: 3.42

GC content: 60.41

Gene sequence:

>591_bases
GTGAGACGCTACGTGGAGCCCGGGAAGTTCGTACTGCCCGGCGACAAGATAACCGTGGCGGAGGCGTTCTACCCTGGCCC
AGGTACCTACGAGGATGGTGGTGTCGTTCGGGCCGCCATCACCGGGCGAGTGGAAGTGGATCTCGAGGAGCGTGAGGTTC
GCGTCGAACCGTACGTGGACACACCACCGAAATTGAAACGGGGAGCCTCGGTGATCGGACGAGTACAGTCGGTGAAAGAG
CAGGTCGTTCTCGTCAAGATATGCTTCGTGGACGATCGGACGGACCGTGAGCCCCCAACCTCCGGAGTGGGAGGGATCCA
TATCTCAAAGGTCAGAGACGCCTACGTGGAGGATCTGGCCGACGAGTTTCAGCCCGGAGACATCGTTCGCGCTCGAGTCG
TGAGCACCAAGATGCCGGTACAGCTGTCCACTGTGGGTAAAGAATACGGGGTGGTCCTCGCGTACTGCACCCGATGTAGA
TCCGAGCTCGAAAAGGTGAAGGGTCGGACTCTCCGTTGCCCCGTGTGCGGTCACACCGAGACAAGAAAAGTTGCGGCCGG
CTACTTGCGGGAGGCCGAGAGCGATGCCTAA

Upstream 100 bases:

>100_bases
CGGCCGGGGGCGTCGTCCCCGAAAGCAGGGTCGAGGAGTTCCTGAGACTGTTCGGGGAGGAGGTGAAGAGACAGGTCGAA
AGCGCCCGGACGAGGAAGTC

Downstream 100 bases:

>100_bases
GATGGAGAAGCGCGAGATAACATTCACCTTCCCCGACCGTGACTCCGCCCAGCGATTCCTCCGTGCCGTCGAAGCCACTC
AGGCCCGAGGTGTAGACACC

Product: exosome complex RNA-binding protein Csl4

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MRRYVEPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITGRVEVDLEEREVRVEPYVDTPPKLKRGASVIGRVQSVKE
QVVLVKICFVDDRTDREPPTSGVGGIHISKVRDAYVEDLADEFQPGDIVRARVVSTKMPVQLSTVGKEYGVVLAYCTRCR
SELEKVKGRTLRCPVCGHTETRKVAAGYLREAESDA

Sequences:

>Translated_196_residues
MRRYVEPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITGRVEVDLEEREVRVEPYVDTPPKLKRGASVIGRVQSVKE
QVVLVKICFVDDRTDREPPTSGVGGIHISKVRDAYVEDLADEFQPGDIVRARVVSTKMPVQLSTVGKEYGVVLAYCTRCR
SELEKVKGRTLRCPVCGHTETRKVAAGYLREAESDA
>Mature_196_residues
MRRYVEPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITGRVEVDLEEREVRVEPYVDTPPKLKRGASVIGRVQSVKE
QVVLVKICFVDDRTDREPPTSGVGGIHISKVRDAYVEDLADEFQPGDIVRARVVSTKMPVQLSTVGKEYGVVLAYCTRCR
SELEKVKGRTLRCPVCGHTETRKVAAGYLREAESDA

Specific function: Unknown

COG id: COG1096

COG function: function code J; Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21612; Mature: 21612

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYVEPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITGRVEVDLEEREVRVEPYVD
CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECEEEEEECCCEEEECCCCC
TPPKLKRGASVIGRVQSVKEQVVLVKICFVDDRTDREPPTSGVGGIHISKVRDAYVEDLA
CCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
DEFQPGDIVRARVVSTKMPVQLSTVGKEYGVVLAYCTRCRSELEKVKGRTLRCPVCGHTE
HHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
TRKVAAGYLREAESDA
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRYVEPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITGRVEVDLEEREVRVEPYVD
CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECEEEEEECCCEEEECCCCC
TPPKLKRGASVIGRVQSVKEQVVLVKICFVDDRTDREPPTSGVGGIHISKVRDAYVEDLA
CCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
DEFQPGDIVRARVVSTKMPVQLSTVGKEYGVVLAYCTRCRSELEKVKGRTLRCPVCGHTE
HHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
TRKVAAGYLREAESDA
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA