Click here to switch to the map view.

The map label for this gene is yhcC [C]

Identifier: 20093484

GI number: 20093484

Start: 40642

End: 41649

Strand: Reverse

Name: yhcC [C]

Synonym: MK0044

Alternate gene names: 20093484

Gene position: 41649-40642 (Counterclockwise)

Preceding gene: 20093487

Following gene: 20093483

Centisome position: 2.46

GC content: 61.01

Gene sequence:

>1008_bases
CTGTACGAGGACGGAGAGAAGTTCGCGGCCTTCGGCGCGTATTACCGTCGCGAGAAAGGTTGCAAGGTTATGAAGGCGGC
CGTGGACGCCGGCTTCGTGTGCCCGAACAAGGACGGCAGGATATCCCGGGAAGGGTGCCTATTCTGCCCGAAGATGGGCA
GGACGATCATCACTCCCAACGTGGACCCGCGTAAGAAGCTCGAGGAGCAGGCTCGTAAGCAGATGGAAGTGTTCCGCGAG
AGGTACGGTGCCGAGAAGTTCCTCGTGTACTTCTACCCGGCCACGAACACCTACGCGCCTCCCGACGTCCTGGAGGAACT
GTACAACCGTGCCCTGGAGATGGAAGACGTCGTCGGTCTATCCATAGGAACACGACCGGACTGCTTACCGGACGAGGTCC
TGGACATCCTCGAGGGCTACGTCAAAGAAGGTTACGACGTCTGGCTCGAGATAGGGGTTCAGTCTTACCACCATCGCACC
TTGCGCCGCACGCGGCGCGGTCACGGACTTGCCGAGGTGATCGACGCCATCACCCGGGCCAAGGAACGCGGGATCCGAAT
AGTTAACCACATCATCTTCGGGCTTCCCGGTGAGACCCGAGACGAGATGCTTGAGACCGTCAGGGTCCTCTCGGTGCTCG
GAGTGGAGGCCGTGAAGCTGTATCCGCTGGTCGTGCTAGAGCGTACCGATCTGGAACGTATGTACTACGATCGCCGCTAC
AAGCCGCTGAGCTACCGCGAGTACATCAGGCTCCTGGCCGATGCCCTGGAACGTATGGCGCCGACCGTCCTCATTCAGAG
GCTCTCTAAGGACAGGGCACCGGACGAGGAGAGGATCGAGCCCGAGTGGGACCTGTACCGAATGCGGGTGATCTCCGACG
TCCGTAAGGAGCTGGCCCGGCGCGAGTCGAGGCAGGGTGAACTGTACAAGGTGGGTCTTAGCGCCGAAGAACTCGTGCCA
CTGGTTAAGGGGGCTACGGGCGCCGAGAGATCCGGGGTATCCACGTGA

Upstream 100 bases:

>100_bases
TAAATCCGATCTCCGGGACCTCGAGACGCTCCAACGGGAGGTCGAACCGGCGACCGATGGTGCCTTACCCAGGTACGTCG
ACGAACGGATAGTCCGGGAG

Downstream 100 bases:

>100_bases
GCGCGTCCCACCCCTTGCGTTATTTGTTACGACACCCGTGACGATTACGGGCGGGCGGCGGTGGGTGGGCTATAGCCCGC
CTTCTGTAGCCTTAGACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MYEDGEKFAAFGAYYRREKGCKVMKAAVDAGFVCPNKDGRISREGCLFCPKMGRTIITPNVDPRKKLEEQARKQMEVFRE
RYGAEKFLVYFYPATNTYAPPDVLEELYNRALEMEDVVGLSIGTRPDCLPDEVLDILEGYVKEGYDVWLEIGVQSYHHRT
LRRTRRGHGLAEVIDAITRAKERGIRIVNHIIFGLPGETRDEMLETVRVLSVLGVEAVKLYPLVVLERTDLERMYYDRRY
KPLSYREYIRLLADALERMAPTVLIQRLSKDRAPDEERIEPEWDLYRMRVISDVRKELARRESRQGELYKVGLSAEELVP
LVKGATGAERSGVST

Sequences:

>Translated_335_residues
MYEDGEKFAAFGAYYRREKGCKVMKAAVDAGFVCPNKDGRISREGCLFCPKMGRTIITPNVDPRKKLEEQARKQMEVFRE
RYGAEKFLVYFYPATNTYAPPDVLEELYNRALEMEDVVGLSIGTRPDCLPDEVLDILEGYVKEGYDVWLEIGVQSYHHRT
LRRTRRGHGLAEVIDAITRAKERGIRIVNHIIFGLPGETRDEMLETVRVLSVLGVEAVKLYPLVVLERTDLERMYYDRRY
KPLSYREYIRLLADALERMAPTVLIQRLSKDRAPDEERIEPEWDLYRMRVISDVRKELARRESRQGELYKVGLSAEELVP
LVKGATGAERSGVST
>Mature_335_residues
MYEDGEKFAAFGAYYRREKGCKVMKAAVDAGFVCPNKDGRISREGCLFCPKMGRTIITPNVDPRKKLEEQARKQMEVFRE
RYGAEKFLVYFYPATNTYAPPDVLEELYNRALEMEDVVGLSIGTRPDCLPDEVLDILEGYVKEGYDVWLEIGVQSYHHRT
LRRTRRGHGLAEVIDAITRAKERGIRIVNHIIFGLPGETRDEMLETVRVLSVLGVEAVKLYPLVVLERTDLERMYYDRRY
KPLSYREYIRLLADALERMAPTVLIQRLSKDRAPDEERIEPEWDLYRMRVISDVRKELARRESRQGELYKVGLSAEELVP
LVKGATGAERSGVST

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yhcC [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=190, Percent_Identity=28.4210526315789, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI2367204, Length=273, Percent_Identity=34.4322344322344, Blast_Score=184, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI133955098, Length=163, Percent_Identity=31.9018404907975, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325171, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19920684, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 38682; Mature: 38682

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEDGEKFAAFGAYYRREKGCKVMKAAVDAGFVCPNKDGRISREGCLFCPKMGRTIITPN
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCEEECCC
VDPRKKLEEQARKQMEVFRERYGAEKFLVYFYPATNTYAPPDVLEELYNRALEMEDVVGL
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
SIGTRPDCLPDEVLDILEGYVKEGYDVWLEIGVQSYHHRTLRRTRRGHGLAEVIDAITRA
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KERGIRIVNHIIFGLPGETRDEMLETVRVLSVLGVEAVKLYPLVVLERTDLERMYYDRRY
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCC
KPLSYREYIRLLADALERMAPTVLIQRLSKDRAPDEERIEPEWDLYRMRVISDVRKELAR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHH
RESRQGELYKVGLSAEELVPLVKGATGAERSGVST
HHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MYEDGEKFAAFGAYYRREKGCKVMKAAVDAGFVCPNKDGRISREGCLFCPKMGRTIITPN
CCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCEEECCC
VDPRKKLEEQARKQMEVFRERYGAEKFLVYFYPATNTYAPPDVLEELYNRALEMEDVVGL
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
SIGTRPDCLPDEVLDILEGYVKEGYDVWLEIGVQSYHHRTLRRTRRGHGLAEVIDAITRA
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KERGIRIVNHIIFGLPGETRDEMLETVRVLSVLGVEAVKLYPLVVLERTDLERMYYDRRY
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCC
KPLSYREYIRLLADALERMAPTVLIQRLSKDRAPDEERIEPEWDLYRMRVISDVRKELAR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHH
RESRQGELYKVGLSAEELVPLVKGATGAERSGVST
HHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]