Click here to switch to the map view.

The map label for this gene is ymfH [H]

Identifier: 19747030

GI number: 19747030

Start: 1872265

End: 1873554

Strand: Reverse

Name: ymfH [H]

Synonym: spyM18_2233

Alternate gene names: 19747030

Gene position: 1873554-1872265 (Counterclockwise)

Preceding gene: 19747031

Following gene: 19747029

Centisome position: 98.87

GC content: 31.94

Gene sequence:

>1290_bases
ATGACAAAATTAGTAAAGATAAACTATCCTAATATTGACGAAGACCTTTACTATGTAAAATTAGAAAATGGTTTAACTGT
TTATTTTATAAAAAAAATAGGGTTTTTAGAAAAAACAGCTATGTTGACAGTAGGTTTCGGTTCTCTTGACAATAAGTTGA
CAGTCGATGACGAATCACGAGATGCTCCAGCAGGTATTGCACACTTTTTAGAACATAAACTCTTTGAAGATGAATCAGGT
GGAGATATTTCATTAAAGTTTACACAACTAGGAGCAGAGACAAATGCCTTTACAACTTTCAACCAAACGAGTTTCTTCTT
TTCAACAGCTAGTAAATTTCAGGAAAATTTGGAACTCCTTCAATATTTTGTTCTTTCTGCTAATATAACAGATGAATCTG
TTAGTAGAGAAAAAAAAATAATCGGGCAAGAAATTGATATGTATCAAGATGATGCTGACTACCGTGCATATAGTGGAATC
CTTCAGAACTTATTTCCAAAAACAAGTTTAGCTAATGATATTGCTGGCTCAAAAGAATCCATTCAGAAGATCACGAAAAT
ATTATTGGAAACGCATCATACTTATTTTTACCAACCTACTAATATGAGTCTATTCATTGTCGGTGATATTGATATTGACG
AAACTTTTTTAGCTATTCAAAGGTTTCAAACCACATTATCCTATCCAGATAGAAAAAGGGTAACTGTTGATCCTTTACAC
TACTATCCTGTTATTAAATCATCTTCTGTTGACATGGATGTTACTACTGCCAAGCTGGTTGTTGGTTTTCGAGGGTATCT
GACCTTAACTCAGCATTCACTATTAACGTATCGTATTGCCTTGAAGCTATTTTTATCAATGCTTATAGGTTGGACTTCTA
AAATCTATCATACGCTATATGAAGATGGTAAAATAGACGATTCATTTGATGTGGATGTTGAAATTCATCATAATTTTCAA
TTTGTATTAATATCACTTGATACACCAGAGCCTATCGCAATGTCTAACTATATCCGTCAAAAATTAGCCACTATAAAGAT
ATCAAAAGAGTTTACAAATGAGCACTTAAATCTATTAAAAAAAGAAATGTATGGTGACTTTATTCAGAGTTTAGACTCTA
TAGAACATTTAACCCATCAGTTCAGTCTATACCTGTCTGATTCTGATAAAGAAACATATTTTGATATTCCAAAAATTATA
GAAAGACTCACTCTAAAAGATGTTGTTACAATTGGAAAAGCATTTTTTGAAAAAGCTGATGCTTCAGACTTCACAGTCTT
CCCAAAATAG

Upstream 100 bases:

>100_bases
AATTGGATTAAAGGGGTTAATGAAGTTAATAAAGTAGATATCATTAAAGTAGCTAATCTTTTAAAGCTTCAAACTGTCTA
TTTTTTAGAAGGAATATAAA

Downstream 100 bases:

>100_bases
ATGAAAATCTGTTATAATAGGGTTACTATATTATTTTTGAGGTACCTGTATGAGTGAAAAAAGTCTTGGTGAAGTGTTAA
GAGAATCGCGTGTTGGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MTKLVKINYPNIDEDLYYVKLENGLTVYFIKKIGFLEKTAMLTVGFGSLDNKLTVDDESRDAPAGIAHFLEHKLFEDESG
GDISLKFTQLGAETNAFTTFNQTSFFFSTASKFQENLELLQYFVLSANITDESVSREKKIIGQEIDMYQDDADYRAYSGI
LQNLFPKTSLANDIAGSKESIQKITKILLETHHTYFYQPTNMSLFIVGDIDIDETFLAIQRFQTTLSYPDRKRVTVDPLH
YYPVIKSSSVDMDVTTAKLVVGFRGYLTLTQHSLLTYRIALKLFLSMLIGWTSKIYHTLYEDGKIDDSFDVDVEIHHNFQ
FVLISLDTPEPIAMSNYIRQKLATIKISKEFTNEHLNLLKKEMYGDFIQSLDSIEHLTHQFSLYLSDSDKETYFDIPKII
ERLTLKDVVTIGKAFFEKADASDFTVFPK

Sequences:

>Translated_429_residues
MTKLVKINYPNIDEDLYYVKLENGLTVYFIKKIGFLEKTAMLTVGFGSLDNKLTVDDESRDAPAGIAHFLEHKLFEDESG
GDISLKFTQLGAETNAFTTFNQTSFFFSTASKFQENLELLQYFVLSANITDESVSREKKIIGQEIDMYQDDADYRAYSGI
LQNLFPKTSLANDIAGSKESIQKITKILLETHHTYFYQPTNMSLFIVGDIDIDETFLAIQRFQTTLSYPDRKRVTVDPLH
YYPVIKSSSVDMDVTTAKLVVGFRGYLTLTQHSLLTYRIALKLFLSMLIGWTSKIYHTLYEDGKIDDSFDVDVEIHHNFQ
FVLISLDTPEPIAMSNYIRQKLATIKISKEFTNEHLNLLKKEMYGDFIQSLDSIEHLTHQFSLYLSDSDKETYFDIPKII
ERLTLKDVVTIGKAFFEKADASDFTVFPK
>Mature_428_residues
TKLVKINYPNIDEDLYYVKLENGLTVYFIKKIGFLEKTAMLTVGFGSLDNKLTVDDESRDAPAGIAHFLEHKLFEDESGG
DISLKFTQLGAETNAFTTFNQTSFFFSTASKFQENLELLQYFVLSANITDESVSREKKIIGQEIDMYQDDADYRAYSGIL
QNLFPKTSLANDIAGSKESIQKITKILLETHHTYFYQPTNMSLFIVGDIDIDETFLAIQRFQTTLSYPDRKRVTVDPLHY
YPVIKSSSVDMDVTTAKLVVGFRGYLTLTQHSLLTYRIALKLFLSMLIGWTSKIYHTLYEDGKIDDSFDVDVEIHHNFQF
VLISLDTPEPIAMSNYIRQKLATIKISKEFTNEHLNLLKKEMYGDFIQSLDSIEHLTHQFSLYLSDSDKETYFDIPKIIE
RLTLKDVVTIGKAFFEKADASDFTVFPK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=234, Percent_Identity=25.2136752136752, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49245; Mature: 49113

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLVKINYPNIDEDLYYVKLENGLTVYFIKKIGFLEKTAMLTVGFGSLDNKLTVDDESR
CCEEEEECCCCCCCCEEEEEECCCEEEEEEECCCCHHHEEEEEEECCCCCCEEEECCCCC
DAPAGIAHFLEHKLFEDESGGDISLKFTQLGAETNAFTTFNQTSFFFSTASKFQENLELL
CCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHH
QYFVLSANITDESVSREKKIIGQEIDMYQDDADYRAYSGILQNLFPKTSLANDIAGSKES
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHH
IQKITKILLETHHTYFYQPTNMSLFIVGDIDIDETFLAIQRFQTTLSYPDRKRVTVDPLH
HHHHHHHHHHHCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCEE
YYPVIKSSSVDMDVTTAKLVVGFRGYLTLTQHSLLTYRIALKLFLSMLIGWTSKIYHTLY
EEEEEECCCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDGKIDDSFDVDVEIHHNFQFVLISLDTPEPIAMSNYIRQKLATIKISKEFTNEHLNLLK
CCCCCCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHH
KEMYGDFIQSLDSIEHLTHQFSLYLSDSDKETYFDIPKIIERLTLKDVVTIGKAFFEKAD
HHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCC
ASDFTVFPK
CCCEEECCC
>Mature Secondary Structure 
TKLVKINYPNIDEDLYYVKLENGLTVYFIKKIGFLEKTAMLTVGFGSLDNKLTVDDESR
CEEEEECCCCCCCCEEEEEECCCEEEEEEECCCCHHHEEEEEEECCCCCCEEEECCCCC
DAPAGIAHFLEHKLFEDESGGDISLKFTQLGAETNAFTTFNQTSFFFSTASKFQENLELL
CCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHH
QYFVLSANITDESVSREKKIIGQEIDMYQDDADYRAYSGILQNLFPKTSLANDIAGSKES
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHH
IQKITKILLETHHTYFYQPTNMSLFIVGDIDIDETFLAIQRFQTTLSYPDRKRVTVDPLH
HHHHHHHHHHHCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCEE
YYPVIKSSSVDMDVTTAKLVVGFRGYLTLTQHSLLTYRIALKLFLSMLIGWTSKIYHTLY
EEEEEECCCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDGKIDDSFDVDVEIHHNFQFVLISLDTPEPIAMSNYIRQKLATIKISKEFTNEHLNLLK
CCCCCCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHH
KEMYGDFIQSLDSIEHLTHQFSLYLSDSDKETYFDIPKIIERLTLKDVVTIGKAFFEKAD
HHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCC
ASDFTVFPK
CCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]