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The map label for this gene is araC [C]

Identifier: 19746500

GI number: 19746500

Start: 1298799

End: 1299539

Strand: Reverse

Name: araC [C]

Synonym: spyM18_1570

Alternate gene names: 19746500

Gene position: 1299539-1298799 (Counterclockwise)

Preceding gene: 19746501

Following gene: 19746499

Centisome position: 68.58

GC content: 40.08

Gene sequence:

>741_bases
GTGTACTCATTGTTAATTGTAGAAGACGAATACCTTATCCGCCAAGGTGTTCGTTCTTTGGTTGATTTTAGCCAGTTCAA
GATTGATCGGGTCAACGAAGCAGAAAATGGCCAGTTGGCTTGGGACTTGTTTCAGAAAGAGCCTTATGATATTGTTTTGA
CGGATATCAATATGCCCAAATTAAATGGGATTCAACTAGCAGAACTCATTAAACAGGAATCCCCCCAAACTCATCTGGTA
TTTTTGACGGGCTACGATGATTTTAACTATGCCTTATCTGCTTTGAAATTAGGGGCAGATGATTACTTGCTCAAACCCTT
TTCCAAGGCAGATGTAGAAGACATGTTAGGAAAGCTCCGGAAAAAATTAGAACTTTCCAAGAAAACAGAAACCATTCAGG
AATTGGTTGAGCAGCCTCAAAAAGAAGTATCAGCAATAGCAATGGCTATTCATGAGCGGTTGGCAGATTCTGATTTGACC
CTAAAAAGCTTGGCTCAGCAGCTTGGTTTTAGCCCTAATTACCTTAGCGTCTTGATTAAAAAAGATTTAGGGATGCCCTT
TCAAGATTATCTGGTACAAGAACGGTTGAAAAAAGCTAAGCTTCTCTTGTTAACCAGTAATCTTAAAATCTATGAAATTG
CAGAGCAGGTCGGCTTTGAGGACATGAATTATTTTTCTCAGCGCTTTAAGCAACTGGTAGGCGTTACCCCAAGTCAGTAT
AAAAAAGGAGGCCAGGCATGA

Upstream 100 bases:

>100_bases
ATCTGTAGAATAGGGTTAGGCCTAAAAATCTGATATAATAGAAGAAAGACTAATATGAGAGGGCCATGCAAGGCCCTTTA
TAAAGATAAGGAGACACCGT

Downstream 100 bases:

>100_bases
AGCGTTATCCCCTACTGGTCCAGTTGATTTCGTATGTCTTTGTGATCGTAATTGCCCTTATTACCACACTGGGCTTACTC
TATTACCAGACCAGTTCTCG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MYSLLIVEDEYLIRQGVRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLV
FLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLT
LKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQY
KKGGQA

Sequences:

>Translated_246_residues
MYSLLIVEDEYLIRQGVRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLV
FLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLT
LKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQY
KKGGQA
>Mature_246_residues
MYSLLIVEDEYLIRQGVRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLV
FLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLT
LKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQY
KKGGQA

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=122, Percent_Identity=34.4262295081967, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790391, Length=98, Percent_Identity=43.8775510204082, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082052, Length=154, Percent_Identity=32.4675324675325, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788550, Length=132, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788725, Length=121, Percent_Identity=30.5785123966942, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788724, Length=129, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789402, Length=145, Percent_Identity=26.2068965517241, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788191, Length=124, Percent_Identity=30.6451612903226, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790863, Length=105, Percent_Identity=34.2857142857143, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28151; Mature: 28151

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSLLIVEDEYLIRQGVRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPK
CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHCCCCCEEEEEECCCCC
LNGIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLR
CCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHH
KKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH
KDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQY
HHCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH
KKGGQA
CCCCCC
>Mature Secondary Structure
MYSLLIVEDEYLIRQGVRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPK
CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHCCCCCEEEEEECCCCC
LNGIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLR
CCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHH
KKLELSKKTETIQELVEQPQKEVSAIAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH
KDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQY
HHCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH
KKGGQA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA