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The map label for this gene is xtmB [H]

Identifier: 19746248

GI number: 19746248

Start: 1068463

End: 1069758

Strand: Reverse

Name: xtmB [H]

Synonym: spyM18_1277

Alternate gene names: 19746248

Gene position: 1069758-1068463 (Counterclockwise)

Preceding gene: 19746249

Following gene: 19746247

Centisome position: 56.45

GC content: 38.19

Gene sequence:

>1296_bases
TTGCAAATGAAGACAACATCCCTGATTAAAGTAGATTTACCATCAACAATCGGTATAGGTTATGGCGCTTTTTGGCGGTC
TAGAAATTTTTATCGAGTAGTTAAAGGTAGCCGCGGATCTAAAAAATCTAAAACGACTGCTTTAAATTTTATCGTTAGAT
TGCTGAAGTATCCGTGGGCTAACTTATTGGTCATCCGTAGATATTCAAACACCAACAAACAGTCAACCTATACAGATTTT
AAATGGGCATGTAATCAATTAAAGGTTTCGCATCTTTTTAAATTCAATGAGAGTTTGCCAGAAATAACTGTAAAGGCAAC
GGGCCAAAAGATACTGTTCCGTGGACTTGATGATGAGTTAAAAATCACATCTATTACTGTCGATGTTGGCGCTTTGTGCT
GGGCTTGGTTTGAAGAGGCTTACCAGATAGAGACAGAAGATAAGTTTTCAACAGTTGTAGAATCAATCCGTGGTACTTCA
GATGTTCCTGATTTTTTTAAACAGATAACAGTCACGTTTAACCCGTGGTCAGAAAGACATTGGCTTAAACGTGTCTTTTT
TGATGAAGAAACTAAACGGGCTGATACATTTTCTGGGACTACAACATTTAGAGTAAACGAATGGCTTGATGATGTCGATA
AAAGACGCTACGAAGATTTGTACAAGACTAATCCAAGGCGGGCTAGAATCGTGTGCGATGGTGAATGGGGCGTTGCTGAA
GGTCTTGTTTTTGATAACTTTGAAGTCGTAGATTTTGATGTTGAAAAAACAATTCAACGCGTTAAAGAGACCTCGGTCGG
TATGGACTTTGGGTTTACTCAAGACCCTACAACTCTTATATGTGTTGCAGTTGACCTCGCAAACAAAGAGTTATGGCTTT
ACAACGAACATTATCAAAAGGCTATGTTAACAGATCATATTGTCAAAATGATAAGAGATAAAAACTTGCATAGGTCTTAC
ATCGCAGGGGATAGCGCCGAAAAACGCCTCATTGCAGAAATAAAAAGTAAAGGGGTGTCTGGAATTGTCCCGAGTATTAA
AGGTAAAGGGTCAATCATGCAAGGGATTCAATTCATGCAGGGGTTTAAGATATATATTCACCCATCTTGTGAACACACAA
TTGAAGAGTTTAACACTTACACCTTTAAACAAGACAAAGAGGGCAATTGGTTAAACGAACCGATAGATAAGAATAACCAC
GTTATTGATGCGATTAGATATGCGCTTGAAAAATACCATATCAGAAGCAACGAGTCAAATCAGTTTGAAGTTCTTAGGGC
TGGTTTTGGTTACTAG

Upstream 100 bases:

>100_bases
CCAAGTCACGAAGAACAGGGTAGGGCTAGGGATAGAATTTATAAAGTTAATGGAGCTTACTCAGAAAAACGTGAATTAGA
GCATTCTGGAACGGTGGTGT

Downstream 100 bases:

>100_bases
AAAGGAAAATAATGTACACAGAATCATTTAGAGATAGTACGGGAAAGACTAAAACATTAGAGTTTAGGTTCCACCGTGAA
GCTCGCATGAGGTATCAAGC

Product: terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MQMKTTSLIKVDLPSTIGIGYGAFWRSRNFYRVVKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDF
KWACNQLKVSHLFKFNESLPEITVKATGQKILFRGLDDELKITSITVDVGALCWAWFEEAYQIETEDKFSTVVESIRGTS
DVPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAE
GLVFDNFEVVDFDVEKTIQRVKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRSY
IAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFMQGFKIYIHPSCEHTIEEFNTYTFKQDKEGNWLNEPIDKNNH
VIDAIRYALEKYHIRSNESNQFEVLRAGFGY

Sequences:

>Translated_431_residues
MQMKTTSLIKVDLPSTIGIGYGAFWRSRNFYRVVKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDF
KWACNQLKVSHLFKFNESLPEITVKATGQKILFRGLDDELKITSITVDVGALCWAWFEEAYQIETEDKFSTVVESIRGTS
DVPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAE
GLVFDNFEVVDFDVEKTIQRVKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRSY
IAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFMQGFKIYIHPSCEHTIEEFNTYTFKQDKEGNWLNEPIDKNNH
VIDAIRYALEKYHIRSNESNQFEVLRAGFGY
>Mature_431_residues
MQMKTTSLIKVDLPSTIGIGYGAFWRSRNFYRVVKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDF
KWACNQLKVSHLFKFNESLPEITVKATGQKILFRGLDDELKITSITVDVGALCWAWFEEAYQIETEDKFSTVVESIRGTS
DVPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAE
GLVFDNFEVVDFDVEKTIQRVKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRSY
IAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFMQGFKIYIHPSCEHTIEEFNTYTFKQDKEGNWLNEPIDKNNH
VIDAIRYALEKYHIRSNESNQFEVLRAGFGY

Specific function: Functions as a terminase [H]

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 50077; Mature: 50077

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMKTTSLIKVDLPSTIGIGYGAFWRSRNFYRVVKGSRGSKKSKTTALNFIVRLLKYPWA
CCCCCCEEEEEECCCCCCCCCHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
NLLVIRRYSNTNKQSTYTDFKWACNQLKVSHLFKFNESLPEITVKATGQKILFRGLDDEL
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCE
KITSITVDVGALCWAWFEEAYQIETEDKFSTVVESIRGTSDVPDFFKQITVTFNPWSERH
EEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHEEEEEECCCHHHH
WLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAE
HHHHHHCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
GLVFDNFEVVDFDVEKTIQRVKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQK
CEEECCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEEEEHHHHHH
AMLTDHIVKMIRDKNLHRSYIAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFMQ
HHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
GFKIYIHPSCEHTIEEFNTYTFKQDKEGNWLNEPIDKNNHVIDAIRYALEKYHIRSNESN
CCEEEECCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
QFEVLRAGFGY
CCCEECCCCCC
>Mature Secondary Structure
MQMKTTSLIKVDLPSTIGIGYGAFWRSRNFYRVVKGSRGSKKSKTTALNFIVRLLKYPWA
CCCCCCEEEEEECCCCCCCCCHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
NLLVIRRYSNTNKQSTYTDFKWACNQLKVSHLFKFNESLPEITVKATGQKILFRGLDDEL
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCE
KITSITVDVGALCWAWFEEAYQIETEDKFSTVVESIRGTSDVPDFFKQITVTFNPWSERH
EEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHEEEEEECCCHHHH
WLKRVFFDEETKRADTFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAE
HHHHHHCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
GLVFDNFEVVDFDVEKTIQRVKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQK
CEEECCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEEEEHHHHHH
AMLTDHIVKMIRDKNLHRSYIAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFMQ
HHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
GFKIYIHPSCEHTIEEFNTYTFKQDKEGNWLNEPIDKNNHVIDAIRYALEKYHIRSNESN
CCEEEECCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
QFEVLRAGFGY
CCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174 [H]