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The map label for this gene is tra [C]

Identifier: 19746041

GI number: 19746041

Start: 870271

End: 871329

Strand: Reverse

Name: tra [C]

Synonym: spyM18_1046

Alternate gene names: 19746041

Gene position: 871329-870271 (Counterclockwise)

Preceding gene: 19746043

Following gene: 19746040

Centisome position: 45.98

GC content: 41.74

Gene sequence:

>1059_bases
ATGCAAGATTATTATACACCAAAAGGCAAACAATTGACAATCCATGAGCGTCGGCAAATTCAACGCTGGAAGCTGGAAGG
TCGCTCTAATCGTGAAATTGCTCGCTTACTAGGTAAGGCCCCCCAGACCATTCATAATGAAATCAAGCGAGGATTGGTTA
GGCAACAGGTTCGTAAAGGAAAGTTTGAAGCCGTTTATTCTGCTCAACATGCTCAGTTGGTCTATCAAGAAAATCGCAAG
CGTTCTGTTAGACCCATTAGACAGCGTAAGCAAGATAGGGAGGCTATTGAACACTACATGCGTCAGAACTATTCCCCTGA
GATGATAGTTAAAGCTAAGGGAGTTCAAGTCCCTGTATCTACCATCTATTACTGGATTCATCATGGGAAATTAAGTCTTG
GTAAGGAGGCTATGCTTTATCCGAGAAAGGCTAAGCAGGCTAGAAAACATGCCAGTCCTTATTTTAAACCCGCAGGAAAG
AGTATTGAACAACGCCCAGATAGCATTAACCAACGTCTTGAAGCTGGGCATTATGAGATTGATACAGTCATTCTGACGAG
GGCTAAAAATCAATGCTTATTCACCCTAACGGACAGGAAAACACGTCATCAGCTGATTCGATTAATACCGGATAAGTCTG
CTCAAGCTGTCAATAAAGCTCTTACGGGGATTCTAAAAGACTACACCGTCAACTCTATCACGGCAGACAACGGGACAGAA
TTTTCTCGCTTATCAGATGTCTTTCCAGCAAGTGACATCTACTATGCCCATCCCTATGCGTCATGGGAGAGAGGCACTAA
CGAAAACCATAATCGCCTGATTCGCAGATGTCTCCCTAAAGGTACCAAAACAACGACCCCTAAAGAAGTCGCTGCTATTG
AACATTGGATCAATCATTATCCTAAACGACTCTTCAACTACAAGTCGCCAGTAGAAATGTTAAAACTGGCTAACTTCAAC
TTGAAATTTGGCTTTATTTTTTTAGTATTAGCTAAACTCAAAATGGTGCTAGTCCTATTTTCTATACAAAATAATACCTT
GCTTTCTACTAGGACTTGA

Upstream 100 bases:

>100_bases
GAAAAATTCTAAAATGAACTTAGCCACTTTTAAGGTATGAAAAAAGCACCTCTAAGAGGTATACTTGTAGTTCACCACAA
ACACAAGGAAACTCAAAAAG

Downstream 100 bases:

>100_bases
TTTAAAATAGAGGGCATGAGTATAACTAAAGAATTTGATACAATTACCGCCATTTCAACCCCTCTTGGTGAAGGAGCTAT
TGGCATTGTTCGTCTATCCG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFGFIFLVLAKLKMVLVLFSIQNNTLLSTRT

Sequences:

>Translated_352_residues
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFGFIFLVLAKLKMVLVLFSIQNNTLLSTRT
>Mature_352_residues
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFGFIFLVLAKLKMVLVLFSIQNNTLLSTRT

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790736, Length=336, Percent_Identity=27.9761904761905, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787671, Length=336, Percent_Identity=27.9761904761905, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786450, Length=336, Percent_Identity=27.9761904761905, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 41110; Mature: 41110

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKG
CCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
KFEAVYSAQHAQLVYQENRKRSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVS
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
TIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGKSIEQRPDSINQRLEAGHYEI
HHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHCCCEEE
DTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
EHEEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHY
HHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
PKRLFNYKSPVEMLKLANFNLKFGFIFLVLAKLKMVLVLFSIQNNTLLSTRT
HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
>Mature Secondary Structure
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKG
CCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
KFEAVYSAQHAQLVYQENRKRSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVS
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
TIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGKSIEQRPDSINQRLEAGHYEI
HHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHCCCEEE
DTVILTRAKNQCLFTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
EHEEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCH
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHY
HHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
PKRLFNYKSPVEMLKLANFNLKFGFIFLVLAKLKMVLVLFSIQNNTLLSTRT
HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8393068 [H]