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The map label for this gene is sodA [H]

Identifier: 197294849

GI number: 197294849

Start: 874968

End: 875579

Strand: Reverse

Name: sodA [H]

Synonym: PAa_0836

Alternate gene names: 197294849

Gene position: 875579-874968 (Counterclockwise)

Preceding gene: 197294850

Following gene: 197294848

Centisome position: 99.5

GC content: 30.07

Gene sequence:

>612_bases
ATGCAATTTAGTTTGCCGCCTTTAAATTTTAAATATGACGCTTTGGAACCATTTTTAGATAAAAAAACAATGGAACTTCA
TTATTCTAAGCATCATCAAACATATGTCAACAACCTTAACGATTCTTTAAAAAAACATCCTCAAATAACCCTTTCTTTAA
GAGAAATGTTAACTGATTTATCTTTAGTTCCTCAAGACATTAGACAAACATGTCGTAATAATGGCGGCGGTCATCTTAAT
CATAGTTTTTTTTGGAACATCCTTAAATTAAACCATGGTCAAGGACCTCAAGGAATTTTAAAAGATTTAATTAACCGTGA
TTTTGGTTCTTTAGAAACCTTTAAAAATAATTTTGCAAATACTGCCAAAACTATTTTCGGGAGTGGTTGGGCTTGGCTCA
TTCTTAATCGTAAAGGTCGTTTAGAAATTACTTCTACTTTTAATCAAGATGTTGTTTTTAATCAAGGAGAACCTCTATTA
GCTTTAGATGTTTGGGAACATGCTTATTATTTAAGTTATCAAAACCGAAGAGTTGATTATATTGAGGCTTTTTTTAACGT
CATAGATTGGAACCAAGTAGAAACTAATCTCAAAAATCATTATAATGAATAA

Upstream 100 bases:

>100_bases
AAACCTTGGAGCCTTCTTAATTTGGCAGGACTCAAAGCTTTAGAAAAAAAGATTTAAAACCATTTATTTTTCTTGAAAAA
ACAAAAAGGAGTTTTTTAAA

Downstream 100 bases:

>100_bases
TCATAAACGCTTTAAAAAATCCAGGTTATTGCGTATCAAAATGATGAAATTATTATATCAATATGATTTTTATAGCAATA
ACTTGAAAAAAATTAGTCAA

Product: Superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MQFSLPPLNFKYDALEPFLDKKTMELHYSKHHQTYVNNLNDSLKKHPQITLSLREMLTDLSLVPQDIRQTCRNNGGGHLN
HSFFWNILKLNHGQGPQGILKDLINRDFGSLETFKNNFANTAKTIFGSGWAWLILNRKGRLEITSTFNQDVVFNQGEPLL
ALDVWEHAYYLSYQNRRVDYIEAFFNVIDWNQVETNLKNHYNE

Sequences:

>Translated_203_residues
MQFSLPPLNFKYDALEPFLDKKTMELHYSKHHQTYVNNLNDSLKKHPQITLSLREMLTDLSLVPQDIRQTCRNNGGGHLN
HSFFWNILKLNHGQGPQGILKDLINRDFGSLETFKNNFANTAKTIFGSGWAWLILNRKGRLEITSTFNQDVVFNQGEPLL
ALDVWEHAYYLSYQNRRVDYIEAFFNVIDWNQVETNLKNHYNE
>Mature_203_residues
MQFSLPPLNFKYDALEPFLDKKTMELHYSKHHQTYVNNLNDSLKKHPQITLSLREMLTDLSLVPQDIRQTCRNNGGGHLN
HSFFWNILKLNHGQGPQGILKDLINRDFGSLETFKNNFANTAKTIFGSGWAWLILNRKGRLEITSTFNQDVVFNQGEPLL
ALDVWEHAYYLSYQNRRVDYIEAFFNVIDWNQVETNLKNHYNE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=45.6410256410256, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=45.6410256410256, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=37.4358974358974, Blast_Score=120, Evalue=1e-27,
Organism=Escherichia coli, GI1790342, Length=203, Percent_Identity=49.2610837438424, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=41.2060301507538, Blast_Score=157, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=39.5, Blast_Score=144, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=194, Percent_Identity=39.1752577319588, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6321796, Length=198, Percent_Identity=37.8787878787879, Blast_Score=144, Evalue=9e-36,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=39.8989898989899, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23818; Mature: 23818

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFSLPPLNFKYDALEPFLDKKTMELHYSKHHQTYVNNLNDSLKKHPQITLSLREMLTDL
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
SLVPQDIRQTCRNNGGGHLNHSFFWNILKLNHGQGPQGILKDLINRDFGSLETFKNNFAN
HCCCHHHHHHHHCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
TAKTIFGSGWAWLILNRKGRLEITSTFNQDVVFNQGEPLLALDVWEHAYYLSYQNRRVDY
HHHHHHCCCEEEEEECCCCCEEEEECCCCCEEECCCCCEEEEEHHHHHEEEEECCCCHHH
IEAFFNVIDWNQVETNLKNHYNE
HHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQFSLPPLNFKYDALEPFLDKKTMELHYSKHHQTYVNNLNDSLKKHPQITLSLREMLTDL
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
SLVPQDIRQTCRNNGGGHLNHSFFWNILKLNHGQGPQGILKDLINRDFGSLETFKNNFAN
HCCCHHHHHHHHCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
TAKTIFGSGWAWLILNRKGRLEITSTFNQDVVFNQGEPLLALDVWEHAYYLSYQNRRVDY
HHHHHHCCCEEEEEECCCCCEEEEECCCCCEEECCCCCEEEEEHHHHHEEEEECCCCHHH
IEAFFNVIDWNQVETNLKNHYNE
HHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]