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The map label for this gene is nusB [H]

Identifier: 197294848

GI number: 197294848

Start: 874559

End: 874975

Strand: Reverse

Name: nusB [H]

Synonym: PAa_0835

Alternate gene names: 197294848

Gene position: 874975-874559 (Counterclockwise)

Preceding gene: 197294849

Following gene: 197294847

Centisome position: 99.43

GC content: 23.5

Gene sequence:

>417_bases
ATGAATAATCATAAACGCTTTAAAAAATCCAGGTTATTGCGTATCAAAATGATGAAATTATTATATCAATATGATTTTTA
TAGCAATAACTTGAAAAAAATTAGTCAAGAAAAACTTCAAAGCGATTTTGAAAAAATTATTATGAAACTCCCCTTTATTG
ATGAAATCATTATTAATAATTTATATAATTATAAGTTAAATCGTCTAAATAAAGTTGACAAAGCCATTATTCGTTTAGCT
ACCTTTGAGCTATTAGAAAACAAAACTCCTTATGCTTTAATTATTGATGAGGCAGTAGAGTTAACGAAACAATTTTGCAA
CTTACATAACGAAAAACAACATAAGTTTAACAATAAACTATTAGATAAAATTCATAAACAATTAGAAATTAAAGAAACTA
CCAAAGAGACTTTTTAA

Upstream 100 bases:

>100_bases
TATTATTTAAGTTATCAAAACCGAAGAGTTGATTATATTGAGGCTTTTTTTAACGTCATAGATTGGAACCAAGTAGAAAC
TAATCTCAAAAATCATTATA

Downstream 100 bases:

>100_bases
GTCTCTTTTTTCTTTTAAAAAAACAAAAAAGAGCGGTAAAATGATCCAAAATATTGGGGTTTTGAATAAACAAAAGTATT
TTTCCGATGATGAAAAGCAA

Product: Transcription termination factor

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNNHKRFKKSRLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEKIIMKLPFIDEIIINNLYNYKLNRLNKVDKAIIRLA
TFELLENKTPYALIIDEAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKETTKETF

Sequences:

>Translated_138_residues
MNNHKRFKKSRLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEKIIMKLPFIDEIIINNLYNYKLNRLNKVDKAIIRLA
TFELLENKTPYALIIDEAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKETTKETF
>Mature_138_residues
MNNHKRFKKSRLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEKIIMKLPFIDEIIINNLYNYKLNRLNKVDKAIIRLA
TFELLENKTPYALIIDEAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKETTKETF

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16795; Mature: 16795

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNHKRFKKSRLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEKIIMKLPFIDEIIINN
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LYNYKLNRLNKVDKAIIRLATFELLENKTPYALIIDEAVELTKQFCNLHNEKQHKFNNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDKIHKQLEIKETTKETF
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNHKRFKKSRLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEKIIMKLPFIDEIIINN
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LYNYKLNRLNKVDKAIIRLATFELLENKTPYALIIDEAVELTKQFCNLHNEKQHKFNNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDKIHKQLEIKETTKETF
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA