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The map label for this gene is csp [H]

Identifier: 197294834

GI number: 197294834

Start: 845290

End: 845523

Strand: Direct

Name: csp [H]

Synonym: PAa_0820

Alternate gene names: 197294834

Gene position: 845290-845523 (Clockwise)

Preceding gene: 197294833

Following gene: 197294845

Centisome position: 96.06

GC content: 35.47

Gene sequence:

>234_bases
ATGCAAGATCAAAGACAACAAGGAACATGTAGATGGTTTTCTGGAGACAAAGGATACGGTTTTATCGTTTCTGCAGAAGG
CAAAGATGTTTTTGTTCACTACAGTTCTATTCAAACTGAAGTTCAAGGAAGAAGAACATTAAACAAAGATGATAAAGTTG
AGTTCAGTATAAAAGAACACGACAACAGAATTCAGGCAGTAGACGTTGTCGTAATTAACGACAGAGAAGAATAA

Upstream 100 bases:

>100_bases
TAAATAAAAAAGCAAAAAAACTTGACTAAAAAAAAAAATAGGTTATAATATTAAATAGGTTATCAAACTGAAACATTGTA
AAAAGGAGTTATTATCAATA

Downstream 100 bases:

>100_bases
TATTTGCAATTTAACAAAAAAAAGATTAATTTCTTTTTTTTGTTGCATTAATTGCATTGTGATGTTTCGTTTTTTAAGAT
GGATTTTGTTTTATTTTTTT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MQDQRQQGTCRWFSGDKGYGFIVSAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEHDNRIQAVDVVVINDREE

Sequences:

>Translated_77_residues
MQDQRQQGTCRWFSGDKGYGFIVSAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEHDNRIQAVDVVVINDREE
>Mature_77_residues
MQDQRQQGTCRWFSGDKGYGFIVSAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEHDNRIQAVDVVVINDREE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=69, Percent_Identity=44.9275362318841, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8935; Mature: 8935

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDQRQQGTCRWFSGDKGYGFIVSAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEH
CCCCCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCEEECCCCCCCCCCCCEEEEEECC
DNRIQAVDVVVINDREE
CCEEEEEEEEEEECCCC
>Mature Secondary Structure
MQDQRQQGTCRWFSGDKGYGFIVSAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEH
CCCCCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCEEECCCCCCCCCCCCEEEEEECC
DNRIQAVDVVVINDREE
CCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139925; 12566566 [H]