| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is lon [H]
Identifier: 197294735
GI number: 197294735
Start: 716544
End: 718907
Strand: Direct
Name: lon [H]
Synonym: PAa_0701
Alternate gene names: 197294735
Gene position: 716544-718907 (Clockwise)
Preceding gene: 197294734
Following gene: 197294738
Centisome position: 81.43
GC content: 29.65
Gene sequence:
>2364_bases ATGAAAACAAAAATAATGAAAAAAACTAAAACTGTTGTAGATTTAGAACAAAACACACAAACGCAATTACCAGCTTTGGC TATTAATGAAATTGTTCCAATGCCAAACGTTGATTTTCGTATTGAAATATCAGACAAACAATATATTAATGCTTTAAAGG AATCAAAAGAACATCATGAATCTTTAGTTGTTATTTTAATAAGACCGGGATTTGGACAAGGAAAGCCAAAAATCACTGAA TTGAATCGTTATGCGGTTTTGGCTCAAATAATTACACAAATTAAAATGCCTCAAGGATTTTATAAAGTAAGATTCCGCAT TTTGCAAAGAGTCAAAGTTCAGAAATTTTTACAAAAAGAACCTTTTTTAAAAGTAGAATATCAAAATATTAACACTGTTT TTGGCAAAATTGAGGAAGAAAAAACCTTAATGAAAATTGTTATTGATACGATTTTAAAAAAACCTTTTCAATTATTAAAC CAAAGTAATAATAATTTTTTAGAAATGATTCAATTTGAGCAAGAAGTAGAAAAAATAACCGACATTATTATTTTTTATTT ACGCATTGATAATTCCGAAAAATATAAATACTTAAAAGAAGCAGACCTTAATAAAAGACTTTTTAACATTTTAAGAGATA TTGATATTTTAACTATGGGGATGCATTTAGAACAAAAAATTAACGAAAAAGTTAAAAAAAGTATTGATGAAAACCAAAAA GAATTTTATTTAAGAGAAAAAATGAAAGCCATCCAAAACGAATTAGGCGATAAAGTTAAAAAAGAAGAAGAAATCGCAGA ATTAAGAAAAAAAATTAACAACACTCCTCTTCCTGAATCAATTAAGAAAAAAGCTTTACAAGAACTGTCGCGTTATCAAT CGTCTTCCTCTTTATTGGCGGAATCTTTTGTAATTAAAAATTATCTAGATTTTTTACTGGAACTCCCTTGGCAAAAAACT ACTCAAGATATTGATGATTTAGCTCAAATAGAAAAATCTCTAGATGATGGTCATTATGGTTTGGCTAAAGTCAAAGAGCG TATTTTAGAATATGCAGCAGTTAAAATTATGACCAAAAAAAATCCTCAAAACATTTTATGTTTAGTGGGTCCACCAGGGG TTGGTAAAACTTCTTTGGTTTCTTCAATCGCCAAATCTTTAGGCAGAAAATTCATTAGGCAGTCTTTGGGAGGCATGAAA GAAGAATCAGAAATTAGAGGCCACAGAAGAACATACATCGGAGCTATGCCAGGCCGCATTCTTGCAGGCATCAAAGAAGC TCAAACAATGAATCCTGTTTTTTTATTAGATGAAATTGATAAATTAATTGCTAATTATAATTTTGACCCTGCATCAGCTT TATTAGAAGTATTAGATCCACAACAAAACAAAACTTTTATTGATCATTTTTTATCAGAACCATTTGATTTGTCTCAAGTT CTTTTCATTACTACTGCTAATTATTTAGATAATGTTCCTGAACCTTTAAAAGATCGAATGGAAATTATCGAAATGAATTC TTACACCGAAAAAGATAAAGTTGAAATTGCTTCTAAATATCTTTTTCCTAAACAATTAGCAAATCACGGTCTTAATCATC AAAATTTAATAATTGAAGATGGAACCTTTCTTTATTTAATTCGTCATTACACTAAAGAAGCGGGCGTAAGAGAATTGGAT AGAATATTGTCAAATCTTACACGCAAAACAGTGAAAGAAATCCTGATCAACAAAAAAGAAAAAGTTATCATTAACACTCA AAATGTTTCTGATTACTTAGGTAAAGAAAAATATTTGCATCTTTTAGCAGAAGAAAAAGAGCAAATAGGATCAACTAATG GTCTGGCTTATACTTATTTTGGCGGCGAATTATTGAAAGTGGAAGTTACTTATTATAAAGGTAAAGGGCAATTATTTTTA ACTGGTAAATTAGGCGATGTCCTTAAAGAAAGTGCTTATACTGCTTTAAGTTTTATTAAAGCTAATGCTGCAAAATTAGG AATTATGGATAACAAGATCTTTTTAGAAAATGATTTTCATATACATCTTCCAGAAGGAGCAGTCCCGAAAGATGGTCCTT CAGCAGGGATTACAATTGCAACTTCTCTTTTTTCTGCCATCACTCGCAAATATATTAAAAAAGGTTTGGGAATGACAGGA GAAATCACTTTGAGAGGTGATGTTTTGGGCATTGGAGGATTAAAAGAAAAAGCTATTGCTGCCAATCGCAGTGGCCTTAA CACTATTTTAATTCCTCAGGAAAATGTTAAAGATATTGAAGATATCCCTGAAGAAGTAAGAACTAAATTAAATATTATTC CTGTTTCAGATGTTTGTGAAGTTTTTTCTAAAGTATTTCTTTAA
Upstream 100 bases:
>100_bases TCTTGAAGTTTTAAAGCAAAATTTATTGTTAGATGAAGCTTGGGAATTAGTAATGAAAAATGTTGTTTTCGCTTAATTAA AAAGTGAAAAGGAGTTCAAA
Downstream 100 bases:
>100_bases TTAAAAAATATTTTAAAATAAAAAATACCACCCTAAAAGAGTGGTATTTTTTTTATCTTTTATTTTATAAAATAATTATT TCTTTGGATGTTTTCTTTGT
Product: ATP-dependent Lon protease
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MKTKIMKKTKTVVDLEQNTQTQLPALAINEIVPMPNVDFRIEISDKQYINALKESKEHHESLVVILIRPGFGQGKPKITE LNRYAVLAQIITQIKMPQGFYKVRFRILQRVKVQKFLQKEPFLKVEYQNINTVFGKIEEEKTLMKIVIDTILKKPFQLLN QSNNNFLEMIQFEQEVEKITDIIIFYLRIDNSEKYKYLKEADLNKRLFNILRDIDILTMGMHLEQKINEKVKKSIDENQK EFYLREKMKAIQNELGDKVKKEEEIAELRKKINNTPLPESIKKKALQELSRYQSSSSLLAESFVIKNYLDFLLELPWQKT TQDIDDLAQIEKSLDDGHYGLAKVKERILEYAAVKIMTKKNPQNILCLVGPPGVGKTSLVSSIAKSLGRKFIRQSLGGMK EESEIRGHRRTYIGAMPGRILAGIKEAQTMNPVFLLDEIDKLIANYNFDPASALLEVLDPQQNKTFIDHFLSEPFDLSQV LFITTANYLDNVPEPLKDRMEIIEMNSYTEKDKVEIASKYLFPKQLANHGLNHQNLIIEDGTFLYLIRHYTKEAGVRELD RILSNLTRKTVKEILINKKEKVIINTQNVSDYLGKEKYLHLLAEEKEQIGSTNGLAYTYFGGELLKVEVTYYKGKGQLFL TGKLGDVLKESAYTALSFIKANAAKLGIMDNKIFLENDFHIHLPEGAVPKDGPSAGITIATSLFSAITRKYIKKGLGMTG EITLRGDVLGIGGLKEKAIAANRSGLNTILIPQENVKDIEDIPEEVRTKLNIIPVSDVCEVFSKVFL
Sequences:
>Translated_787_residues MKTKIMKKTKTVVDLEQNTQTQLPALAINEIVPMPNVDFRIEISDKQYINALKESKEHHESLVVILIRPGFGQGKPKITE LNRYAVLAQIITQIKMPQGFYKVRFRILQRVKVQKFLQKEPFLKVEYQNINTVFGKIEEEKTLMKIVIDTILKKPFQLLN QSNNNFLEMIQFEQEVEKITDIIIFYLRIDNSEKYKYLKEADLNKRLFNILRDIDILTMGMHLEQKINEKVKKSIDENQK EFYLREKMKAIQNELGDKVKKEEEIAELRKKINNTPLPESIKKKALQELSRYQSSSSLLAESFVIKNYLDFLLELPWQKT TQDIDDLAQIEKSLDDGHYGLAKVKERILEYAAVKIMTKKNPQNILCLVGPPGVGKTSLVSSIAKSLGRKFIRQSLGGMK EESEIRGHRRTYIGAMPGRILAGIKEAQTMNPVFLLDEIDKLIANYNFDPASALLEVLDPQQNKTFIDHFLSEPFDLSQV LFITTANYLDNVPEPLKDRMEIIEMNSYTEKDKVEIASKYLFPKQLANHGLNHQNLIIEDGTFLYLIRHYTKEAGVRELD RILSNLTRKTVKEILINKKEKVIINTQNVSDYLGKEKYLHLLAEEKEQIGSTNGLAYTYFGGELLKVEVTYYKGKGQLFL TGKLGDVLKESAYTALSFIKANAAKLGIMDNKIFLENDFHIHLPEGAVPKDGPSAGITIATSLFSAITRKYIKKGLGMTG EITLRGDVLGIGGLKEKAIAANRSGLNTILIPQENVKDIEDIPEEVRTKLNIIPVSDVCEVFSKVFL >Mature_787_residues MKTKIMKKTKTVVDLEQNTQTQLPALAINEIVPMPNVDFRIEISDKQYINALKESKEHHESLVVILIRPGFGQGKPKITE LNRYAVLAQIITQIKMPQGFYKVRFRILQRVKVQKFLQKEPFLKVEYQNINTVFGKIEEEKTLMKIVIDTILKKPFQLLN QSNNNFLEMIQFEQEVEKITDIIIFYLRIDNSEKYKYLKEADLNKRLFNILRDIDILTMGMHLEQKINEKVKKSIDENQK EFYLREKMKAIQNELGDKVKKEEEIAELRKKINNTPLPESIKKKALQELSRYQSSSSLLAESFVIKNYLDFLLELPWQKT TQDIDDLAQIEKSLDDGHYGLAKVKERILEYAAVKIMTKKNPQNILCLVGPPGVGKTSLVSSIAKSLGRKFIRQSLGGMK EESEIRGHRRTYIGAMPGRILAGIKEAQTMNPVFLLDEIDKLIANYNFDPASALLEVLDPQQNKTFIDHFLSEPFDLSQV LFITTANYLDNVPEPLKDRMEIIEMNSYTEKDKVEIASKYLFPKQLANHGLNHQNLIIEDGTFLYLIRHYTKEAGVRELD RILSNLTRKTVKEILINKKEKVIINTQNVSDYLGKEKYLHLLAEEKEQIGSTNGLAYTYFGGELLKVEVTYYKGKGQLFL TGKLGDVLKESAYTALSFIKANAAKLGIMDNKIFLENDFHIHLPEGAVPKDGPSAGITIATSLFSAITRKYIKKGLGMTG EITLRGDVLGIGGLKEKAIAANRSGLNTILIPQENVKDIEDIPEEVRTKLNIIPVSDVCEVFSKVFL
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=839, Percent_Identity=36.4719904648391, Blast_Score=484, Evalue=1e-136, Organism=Homo sapiens, GI21396489, Length=679, Percent_Identity=37.1134020618557, Blast_Score=447, Evalue=1e-125, Organism=Escherichia coli, GI1786643, Length=776, Percent_Identity=40.5927835051546, Blast_Score=581, Evalue=1e-167, Organism=Caenorhabditis elegans, GI17505831, Length=633, Percent_Identity=38.8625592417062, Blast_Score=432, Evalue=1e-121, Organism=Caenorhabditis elegans, GI17556486, Length=525, Percent_Identity=39.2380952380952, Blast_Score=402, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6319449, Length=733, Percent_Identity=36.5620736698499, Blast_Score=445, Evalue=1e-125, Organism=Drosophila melanogaster, GI24666867, Length=680, Percent_Identity=37.9411764705882, Blast_Score=464, Evalue=1e-131, Organism=Drosophila melanogaster, GI221513036, Length=680, Percent_Identity=37.9411764705882, Blast_Score=464, Evalue=1e-131,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 89897; Mature: 89897
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTKIMKKTKTVVDLEQNTQTQLPALAINEIVPMPNVDFRIEISDKQYINALKESKEHHE CCCCHHHHHHHHEEECCCCCCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCC SLVVILIRPGFGQGKPKITELNRYAVLAQIITQIKMPQGFYKVRFRILQRVKVQKFLQKE CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC PFLKVEYQNINTVFGKIEEEKTLMKIVIDTILKKPFQLLNQSNNNFLEMIQFEQEVEKIT CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH DIIIFYLRIDNSEKYKYLKEADLNKRLFNILRDIDILTMGMHLEQKINEKVKKSIDENQK HHEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH EFYLREKMKAIQNELGDKVKKEEEIAELRKKINNTPLPESIKKKALQELSRYQSSSSLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ESFVIKNYLDFLLELPWQKTTQDIDDLAQIEKSLDDGHYGLAKVKERILEYAAVKIMTKK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECC NPQNILCLVGPPGVGKTSLVSSIAKSLGRKFIRQSLGGMKEESEIRGHRRTYIGAMPGRI CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHEECCCCHHH LAGIKEAQTMNPVFLLDEIDKLIANYNFDPASALLEVLDPQQNKTFIDHFLSEPFDLSQV HHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHH LFITTANYLDNVPEPLKDRMEIIEMNSYTEKDKVEIASKYLFPKQLANHGLNHQNLIIED HHHEEHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCEEEEEC GTFLYLIRHYTKEAGVRELDRILSNLTRKTVKEILINKKEKVIINTQNVSDYLGKEKYLH CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHH LLAEEKEQIGSTNGLAYTYFGGELLKVEVTYYKGKGQLFLTGKLGDVLKESAYTALSFIK HHHHHHHHCCCCCCEEEEEECCEEEEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHH ANAAKLGIMDNKIFLENDFHIHLPEGAVPKDGPSAGITIATSLFSAITRKYIKKGLGMTG HCCHHEEEECCEEEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE EITLRGDVLGIGGLKEKAIAANRSGLNTILIPQENVKDIEDIPEEVRTKLNIIPVSDVCE EEEEECCEEECCCCHHHHHHCCCCCCEEEEECCCCCHHHHHCHHHHHHHEEEEEHHHHHH VFSKVFL HHHHHCC >Mature Secondary Structure MKTKIMKKTKTVVDLEQNTQTQLPALAINEIVPMPNVDFRIEISDKQYINALKESKEHHE CCCCHHHHHHHHEEECCCCCCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCC SLVVILIRPGFGQGKPKITELNRYAVLAQIITQIKMPQGFYKVRFRILQRVKVQKFLQKE CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC PFLKVEYQNINTVFGKIEEEKTLMKIVIDTILKKPFQLLNQSNNNFLEMIQFEQEVEKIT CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH DIIIFYLRIDNSEKYKYLKEADLNKRLFNILRDIDILTMGMHLEQKINEKVKKSIDENQK HHEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH EFYLREKMKAIQNELGDKVKKEEEIAELRKKINNTPLPESIKKKALQELSRYQSSSSLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH ESFVIKNYLDFLLELPWQKTTQDIDDLAQIEKSLDDGHYGLAKVKERILEYAAVKIMTKK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECC NPQNILCLVGPPGVGKTSLVSSIAKSLGRKFIRQSLGGMKEESEIRGHRRTYIGAMPGRI CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHEECCCCHHH LAGIKEAQTMNPVFLLDEIDKLIANYNFDPASALLEVLDPQQNKTFIDHFLSEPFDLSQV HHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHH LFITTANYLDNVPEPLKDRMEIIEMNSYTEKDKVEIASKYLFPKQLANHGLNHQNLIIED HHHEEHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCEEEEEC GTFLYLIRHYTKEAGVRELDRILSNLTRKTVKEILINKKEKVIINTQNVSDYLGKEKYLH CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHH LLAEEKEQIGSTNGLAYTYFGGELLKVEVTYYKGKGQLFLTGKLGDVLKESAYTALSFIK HHHHHHHHCCCCCCEEEEEECCEEEEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHH ANAAKLGIMDNKIFLENDFHIHLPEGAVPKDGPSAGITIATSLFSAITRKYIKKGLGMTG HCCHHEEEECCEEEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE EITLRGDVLGIGGLKEKAIAANRSGLNTILIPQENVKDIEDIPEEVRTKLNIIPVSDVCE EEEEECCEEECCCCHHHHHHCCCCCCEEEEECCCCCHHHHHCHHHHHHHEEEEEHHHHHH VFSKVFL HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA