| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is yceA [C]
Identifier: 197294639
GI number: 197294639
Start: 588765
End: 589685
Strand: Reverse
Name: yceA [C]
Synonym: PAa_0595
Alternate gene names: 197294639
Gene position: 589685-588765 (Counterclockwise)
Preceding gene: 197294640
Following gene: 197294638
Centisome position: 67.01
GC content: 30.84
Gene sequence:
>921_bases ATGACACCAACCAAAGAATATCAAGTTATTTTATATTATCAATATACTAAAATAGATGATGTTCAACTTTTTCGCGATAA CCACTTTAAATATTGTCAGTCTTTAGAGTTGCAGGGTCGTGTTATTGTTTCTCAAGAAGGAATTAACGGCACTTTATCCG GAACCAAAAGCAACCTTCAAACTTATATGCAACATTTAAAAAAAGACCATCGTTTTAGTGATATTGTTTTTAAAATAGAC CAAGCAACAAAACATCTTTTTCCTCGTCTTTCTGTGAAAGTCAAAAAAGAAATTGTTAATTTTAATTTCAACCAAGAATT GGATATGGACAAAAACAAAGGAACTTATTTAACTCCTGAATCTTTTTATCATGCGATGCAACAAAAAGACACTTTAATTT TGGACGCTCGTAATGATTATGAATATGATGTCGGTCATTTTCGCAATGCTTTGAACCCTAAAATCAAACATTTTCGCGAT TTACCTGAGTGGGTTGAAAAAAACGTTTCACTGCTTCAAAACCAAAAAATTTTAACTTATTGTACTGGTGGCGTTCGTTG TGAAAAATTTTCTTCTTTCCTTAAACAAAAAGGAATTCAAGAAGTTTACCAACTTGAAGGTGGAGTTATTTCTTATATGC AAAATCCCCAAACTCAAGGAGTTTTATGGGACGGACAAATGTATGTCTTTGATCAAAGAATAACTATTCCCGTTAATCAA AAAGAACATGTTATTGTAGGAAAAGATTATTTTGATCAAACTCCTTGTGAACGCTACATTAATTGTTCTAATCCTGAATG TAATAAACAAATTTTATGCAATGAAGAAAATGAACATAAATATTTAGGAGCTTGTTCCAAAAAATGCCGCCTGCATCCTT CTAACAGATATTTATTAAAACGAAATAATCAACAATTATAA
Upstream 100 bases:
>100_bases TACTTTAAACACTTTTATATATTTAATTTTTTAAACAACCTTAAAATAATTTTATATTTTCTTATTAGAAGAATAAATAA AGCAAGGAACGAGTTATTTT
Downstream 100 bases:
>100_bases CAAAATAAAAATATTTAATTAAAAAATATGTTATAATATATCTTGATTGTTTTTATGTCTTTATTTAATTTTATCTTTAT TAAATTTAACAATGAAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MTPTKEYQVILYYQYTKIDDVQLFRDNHFKYCQSLELQGRVIVSQEGINGTLSGTKSNLQTYMQHLKKDHRFSDIVFKID QATKHLFPRLSVKVKKEIVNFNFNQELDMDKNKGTYLTPESFYHAMQQKDTLILDARNDYEYDVGHFRNALNPKIKHFRD LPEWVEKNVSLLQNQKILTYCTGGVRCEKFSSFLKQKGIQEVYQLEGGVISYMQNPQTQGVLWDGQMYVFDQRITIPVNQ KEHVIVGKDYFDQTPCERYINCSNPECNKQILCNEENEHKYLGACSKKCRLHPSNRYLLKRNNQQL
Sequences:
>Translated_306_residues MTPTKEYQVILYYQYTKIDDVQLFRDNHFKYCQSLELQGRVIVSQEGINGTLSGTKSNLQTYMQHLKKDHRFSDIVFKID QATKHLFPRLSVKVKKEIVNFNFNQELDMDKNKGTYLTPESFYHAMQQKDTLILDARNDYEYDVGHFRNALNPKIKHFRD LPEWVEKNVSLLQNQKILTYCTGGVRCEKFSSFLKQKGIQEVYQLEGGVISYMQNPQTQGVLWDGQMYVFDQRITIPVNQ KEHVIVGKDYFDQTPCERYINCSNPECNKQILCNEENEHKYLGACSKKCRLHPSNRYLLKRNNQQL >Mature_305_residues TPTKEYQVILYYQYTKIDDVQLFRDNHFKYCQSLELQGRVIVSQEGINGTLSGTKSNLQTYMQHLKKDHRFSDIVFKIDQ ATKHLFPRLSVKVKKEIVNFNFNQELDMDKNKGTYLTPESFYHAMQQKDTLILDARNDYEYDVGHFRNALNPKIKHFRDL PEWVEKNVSLLQNQKILTYCTGGVRCEKFSSFLKQKGIQEVYQLEGGVISYMQNPQTQGVLWDGQMYVFDQRITIPVNQK EHVIVGKDYFDQTPCERYINCSNPECNKQILCNEENEHKYLGACSKKCRLHPSNRYLLKRNNQQL
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=301, Percent_Identity=32.2259136212625, Blast_Score=174, Evalue=7e-44, Organism=Escherichia coli, GI1787294, Length=295, Percent_Identity=32.5423728813559, Blast_Score=149, Evalue=3e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 36126; Mature: 35994
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPTKEYQVILYYQYTKIDDVQLFRDNHFKYCQSLELQGRVIVSQEGINGTLSGTKSNLQ CCCCCCEEEEEEEEECCCCCEEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHH TYMQHLKKDHRFSDIVFKIDQATKHLFPRLSVKVKKEIVNFNFNQELDMDKNKGTYLTPE HHHHHHHHCCCHHHHHEEEHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCCCCEECHH SFYHAMQQKDTLILDARNDYEYDVGHFRNALNPKIKHFRDLPEWVEKNVSLLQNQKILTY HHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCCEEEE CTGGVRCEKFSSFLKQKGIQEVYQLEGGVISYMQNPQTQGVLWDGQMYVFDQRITIPVNQ ECCCEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCEEEEEEEEEEEECCC KEHVIVGKDYFDQTPCERYINCSNPECNKQILCNEENEHKYLGACSKKCRLHPSNRYLLK CCEEEEECCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCHHHHHHCHHCEECCCCCEEEE RNNQQL CCCCCC >Mature Secondary Structure TPTKEYQVILYYQYTKIDDVQLFRDNHFKYCQSLELQGRVIVSQEGINGTLSGTKSNLQ CCCCCEEEEEEEEECCCCCEEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHH TYMQHLKKDHRFSDIVFKIDQATKHLFPRLSVKVKKEIVNFNFNQELDMDKNKGTYLTPE HHHHHHHHCCCHHHHHEEEHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCCCCEECHH SFYHAMQQKDTLILDARNDYEYDVGHFRNALNPKIKHFRDLPEWVEKNVSLLQNQKILTY HHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCCEEEE CTGGVRCEKFSSFLKQKGIQEVYQLEGGVISYMQNPQTQGVLWDGQMYVFDQRITIPVNQ ECCCEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCEEEEEEEEEEEECCC KEHVIVGKDYFDQTPCERYINCSNPECNKQILCNEENEHKYLGACSKKCRLHPSNRYLLK CCEEEEECCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCHHHHHHCHHCEECCCCCEEEE RNNQQL CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA