| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
Click here to switch to the map view.
The map label for this gene is argS [H]
Identifier: 197294584
GI number: 197294584
Start: 540757
End: 542430
Strand: Direct
Name: argS [H]
Synonym: PAa_0540
Alternate gene names: 197294584
Gene position: 540757-542430 (Clockwise)
Preceding gene: 197294583
Following gene: 197294585
Centisome position: 61.45
GC content: 25.57
Gene sequence:
>1674_bases ATGACTTTAGAAAATATCAAAATAAAAATAGAAAAAACTTTAAAAAAACTTTTAAATGAAGATGTTTTTTTGCAAGAACA AGTTAATAATTATGATTTTGATTTTTCATTGCCTTTATTCGCTTATGCTAAAAAACAAAAATTGAATCCAGCTTTAATTT TTAAGAATATCGAAAAAGAATTAATTAAAACTGAAGAAATAGAAGAAATAATGTTTTTAAATGGCTTTTTGAATATTAAA TTAAAAAGAAAACTTGTAGCCAAAAATATTTTATTAGAAATAAATCGTCTTCAAAGTAATTACGGGGACCAACCAAACAA AAATAAAACTGTAGTTATTGATTATTCTTCGCCTAATATTGCCAAAAATTTTTCTGTTGGTCATCTTCGTTCAACTGTTT TAGGAAATGCCTTAAAAAACATTTATCAAAAATTAGGTTTTAAAGTGATTGGGATTAACCATTTAGGAGATTGGGGCACT CAATTTGGAAAAATGATTGTTGCTTATCAAAAATGGGGTCAAAAAGAAAAAATTTTAAAAGATCCTATCAACGAACTCCA AAAACTCTATCTTTTGTTTCATCAAAAAGCCGAGGAAAACCAAACATTAAACGATGAGGCCAACGAAGCCTTTTTACAAT TAGAAAAAAAGAATAAAGAATATCTTGAGTTATGGAAGTATTTTCGCGATGTTTCTTTAAATGAATTTTGTAAAATTTAT AAAATTCTCGGAGTTTCTTTTGATTATTTTTTAGGAGAGTCTTTTTATAACGATCAAATAAAAGAACTTTTAGAAGAATT ACACCAAAAAAAACTTTTAAAACAAGAAGAAAAAATGTTGTTAATAGAATTAGATCAATTACCGCCTGGTTTAATTCAAA AAACGAACGGCAGCACTTTATATTTAACTCGCGATTTGGCCACTCTTAAATATCGTTACAAAACTTACAATTGTCAAACT ATTTTGTATGTAGTAGGAAACGAACAAAAACTTTATTTTAAACAATTGGATCAAATTATTAAAAAAATGGGATATCACGA TGTTACAATTGAAAATATTAATTTTGGTTTGGTTTTGATGGATGGTAAAAAAATTTCAACAAGACATCATAAATTTACTA CATTGATGGATGTTATTAATCAAGCAACAAACTTAGCCGAAAAAATTATTCAAGAAAAAAATCCGTCTTTAACTAACATC AAAGAAACTGCTCAAAAAATCGCTGTTGGAGCTATTATTTTTAACGATCTTAAAAATGACAGGCATTTAGATATTGATTT TAACCTTGAAAATATTTTACAATTCAAAGGACAAACAGCCCCTTATTTGCAATATACAGCCGCACGCCTTAATTCACTTT TAAAAAAAGAAAAAATAGATTTTCAATTAATTGATGAAAACATATATCAACAAAATCATTATTTTGCTTTAATCAAATTA TTAAGTCAATTTCCTTGGATTTTAGAAAAAAGCCAAAAAGAAAAAATGCCAAGTATTTTGTCTAGACATCTTATCAAAAT AACTCAAAATGTTAATGGTTTATACGCTCAAGAAAGAATTTTATCTCACGATAAAATAATTAAAAACACTAATCTTTTAT TAATTAAAGCAGTTTTAATTGTTATTAAAGAAAGTTTAAGAATTTTAGGAATTCCTTTTTTAGAAAGCATGTAA
Upstream 100 bases:
>100_bases GAATTTTCCCAAAAATAAAAGGGAATGGAAACTGTTTTTCCTTCCAAAAAAAAGAATGGTTTTTGAAAAAATCATTTAGA TTAATAAGGAAAGTAAAAAA
Downstream 100 bases:
>100_bases ATTTGAGAATAAAAGTTTAAAACACAATACTTGCTTCTTTTTTTCCGTTATCACCAATTAATTTTGAATAAAGTTTAGAA AATACACTTAATTTTTATTT
Product: Arginyl-tRNA synthetase
Products: NA
Alternate protein names: Arginine--tRNA ligase; ArgRS [H]
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MTLENIKIKIEKTLKKLLNEDVFLQEQVNNYDFDFSLPLFAYAKKQKLNPALIFKNIEKELIKTEEIEEIMFLNGFLNIK LKRKLVAKNILLEINRLQSNYGDQPNKNKTVVIDYSSPNIAKNFSVGHLRSTVLGNALKNIYQKLGFKVIGINHLGDWGT QFGKMIVAYQKWGQKEKILKDPINELQKLYLLFHQKAEENQTLNDEANEAFLQLEKKNKEYLELWKYFRDVSLNEFCKIY KILGVSFDYFLGESFYNDQIKELLEELHQKKLLKQEEKMLLIELDQLPPGLIQKTNGSTLYLTRDLATLKYRYKTYNCQT ILYVVGNEQKLYFKQLDQIIKKMGYHDVTIENINFGLVLMDGKKISTRHHKFTTLMDVINQATNLAEKIIQEKNPSLTNI KETAQKIAVGAIIFNDLKNDRHLDIDFNLENILQFKGQTAPYLQYTAARLNSLLKKEKIDFQLIDENIYQQNHYFALIKL LSQFPWILEKSQKEKMPSILSRHLIKITQNVNGLYAQERILSHDKIIKNTNLLLIKAVLIVIKESLRILGIPFLESM
Sequences:
>Translated_557_residues MTLENIKIKIEKTLKKLLNEDVFLQEQVNNYDFDFSLPLFAYAKKQKLNPALIFKNIEKELIKTEEIEEIMFLNGFLNIK LKRKLVAKNILLEINRLQSNYGDQPNKNKTVVIDYSSPNIAKNFSVGHLRSTVLGNALKNIYQKLGFKVIGINHLGDWGT QFGKMIVAYQKWGQKEKILKDPINELQKLYLLFHQKAEENQTLNDEANEAFLQLEKKNKEYLELWKYFRDVSLNEFCKIY KILGVSFDYFLGESFYNDQIKELLEELHQKKLLKQEEKMLLIELDQLPPGLIQKTNGSTLYLTRDLATLKYRYKTYNCQT ILYVVGNEQKLYFKQLDQIIKKMGYHDVTIENINFGLVLMDGKKISTRHHKFTTLMDVINQATNLAEKIIQEKNPSLTNI KETAQKIAVGAIIFNDLKNDRHLDIDFNLENILQFKGQTAPYLQYTAARLNSLLKKEKIDFQLIDENIYQQNHYFALIKL LSQFPWILEKSQKEKMPSILSRHLIKITQNVNGLYAQERILSHDKIIKNTNLLLIKAVLIVIKESLRILGIPFLESM >Mature_556_residues TLENIKIKIEKTLKKLLNEDVFLQEQVNNYDFDFSLPLFAYAKKQKLNPALIFKNIEKELIKTEEIEEIMFLNGFLNIKL KRKLVAKNILLEINRLQSNYGDQPNKNKTVVIDYSSPNIAKNFSVGHLRSTVLGNALKNIYQKLGFKVIGINHLGDWGTQ FGKMIVAYQKWGQKEKILKDPINELQKLYLLFHQKAEENQTLNDEANEAFLQLEKKNKEYLELWKYFRDVSLNEFCKIYK ILGVSFDYFLGESFYNDQIKELLEELHQKKLLKQEEKMLLIELDQLPPGLIQKTNGSTLYLTRDLATLKYRYKTYNCQTI LYVVGNEQKLYFKQLDQIIKKMGYHDVTIENINFGLVLMDGKKISTRHHKFTTLMDVINQATNLAEKIIQEKNPSLTNIK ETAQKIAVGAIIFNDLKNDRHLDIDFNLENILQFKGQTAPYLQYTAARLNSLLKKEKIDFQLIDENIYQQNHYFALIKLL SQFPWILEKSQKEKMPSILSRHLIKITQNVNGLYAQERILSHDKIIKNTNLLLIKAVLIVIKESLRILGIPFLESM
Specific function: Unknown
COG id: COG0018
COG function: function code J; Arginyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI197100773, Length=500, Percent_Identity=33, Blast_Score=256, Evalue=3e-68, Organism=Homo sapiens, GI15149476, Length=540, Percent_Identity=29.4444444444444, Blast_Score=224, Evalue=2e-58, Organism=Escherichia coli, GI1788184, Length=502, Percent_Identity=31.6733067729084, Blast_Score=253, Evalue=3e-68, Organism=Caenorhabditis elegans, GI71985061, Length=450, Percent_Identity=31.5555555555556, Blast_Score=199, Evalue=4e-51, Organism=Caenorhabditis elegans, GI71985068, Length=450, Percent_Identity=31.5555555555556, Blast_Score=198, Evalue=6e-51, Organism=Caenorhabditis elegans, GI17532153, Length=491, Percent_Identity=28.3095723014257, Blast_Score=184, Evalue=1e-46, Organism=Saccharomyces cerevisiae, GI6320548, Length=512, Percent_Identity=31.4453125, Blast_Score=267, Evalue=4e-72, Organism=Saccharomyces cerevisiae, GI6321883, Length=582, Percent_Identity=30.2405498281787, Blast_Score=246, Evalue=5e-66, Organism=Drosophila melanogaster, GI18859963, Length=510, Percent_Identity=29.4117647058824, Blast_Score=190, Evalue=3e-48, Organism=Drosophila melanogaster, GI28571570, Length=371, Percent_Identity=34.2318059299191, Blast_Score=188, Evalue=7e-48,
Paralogues:
None
Copy number: 789 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001278 - InterPro: IPR015945 - InterPro: IPR005148 - InterPro: IPR008909 - InterPro: IPR014729 - InterPro: IPR009080 [H]
Pfam domain/function: PF03485 Arg_tRNA_synt_N; PF05746 DALR_1; PF00750 tRNA-synt_1d [H]
EC number: =6.1.1.19 [H]
Molecular weight: Translated: 65211; Mature: 65080
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLENIKIKIEKTLKKLLNEDVFLQEQVNNYDFDFSLPLFAYAKKQKLNPALIFKNIEKE CCCCCCEEEHHHHHHHHHCCCCEEHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH LIKTEEIEEIMFLNGFLNIKLKRKLVAKNILLEINRLQSNYGDQPNKNKTVVIDYSSPNI HHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC AKNFSVGHLRSTVLGNALKNIYQKLGFKVIGINHLGDWGTQFGKMIVAYQKWGQKEKILK CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHH DPINELQKLYLLFHQKAEENQTLNDEANEAFLQLEKKNKEYLELWKYFRDVSLNEFCKIY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH KILGVSFDYFLGESFYNDQIKELLEELHQKKLLKQEEKMLLIELDQLPPGLIQKTNGSTL HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEEECCCCEE YLTRDLATLKYRYKTYNCQTILYVVGNEQKLYFKQLDQIIKKMGYHDVTIENINFGLVLM EEEECHHHHEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECEEEEEEE DGKKISTRHHKFTTLMDVINQATNLAEKIIQEKNPSLTNIKETAQKIAVGAIIFNDLKND CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC RHLDIDFNLENILQFKGQTAPYLQYTAARLNSLLKKEKIDFQLIDENIYQQNHYFALIKL CEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHHHCCHHHHHHHH LSQFPWILEKSQKEKMPSILSRHLIKITQNVNGLYAQERILSHDKIIKNTNLLLIKAVLI HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH VIKESLRILGIPFLESM HHHHHHHHCCCHHHHCC >Mature Secondary Structure TLENIKIKIEKTLKKLLNEDVFLQEQVNNYDFDFSLPLFAYAKKQKLNPALIFKNIEKE CCCCCEEEHHHHHHHHHCCCCEEHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH LIKTEEIEEIMFLNGFLNIKLKRKLVAKNILLEINRLQSNYGDQPNKNKTVVIDYSSPNI HHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC AKNFSVGHLRSTVLGNALKNIYQKLGFKVIGINHLGDWGTQFGKMIVAYQKWGQKEKILK CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHH DPINELQKLYLLFHQKAEENQTLNDEANEAFLQLEKKNKEYLELWKYFRDVSLNEFCKIY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH KILGVSFDYFLGESFYNDQIKELLEELHQKKLLKQEEKMLLIELDQLPPGLIQKTNGSTL HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEEECCCCEE YLTRDLATLKYRYKTYNCQTILYVVGNEQKLYFKQLDQIIKKMGYHDVTIENINFGLVLM EEEECHHHHEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECEEEEEEE DGKKISTRHHKFTTLMDVINQATNLAEKIIQEKNPSLTNIKETAQKIAVGAIIFNDLKND CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC RHLDIDFNLENILQFKGQTAPYLQYTAARLNSLLKKEKIDFQLIDENIYQQNHYFALIKL CEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHHHCCHHHHHHHH LSQFPWILEKSQKEKMPSILSRHLIKITQNVNGLYAQERILSHDKIIKNTNLLLIKAVLI HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH VIKESLRILGIPFLESM HHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA