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The map label for this gene is rpsF

Identifier: 197294289

GI number: 197294289

Start: 181488

End: 181769

Strand: Reverse

Name: rpsF

Synonym: PAa_0152

Alternate gene names: 197294289

Gene position: 181769-181488 (Counterclockwise)

Preceding gene: 197294292

Following gene: 197294288

Centisome position: 20.66

GC content: 24.11

Gene sequence:

>282_bases
ATGAAAAAATACGAAATTATGTACATTCTAAGGCCTAATTTAGATAATAACGAAGTCAAAAAAATTAATGACCATTTAGA
AAGTGTTTTTAGCAAAAAACCTAGTACAATTTTAGAAAAAAAAGAAATAGGCTTAAAGGATTTAGCTTATCCCATCAATA
ATCATAAAAAAGGTTATTATTATTGGTTTATTACTCAAACTGATAATGAAGCTGTTTTAGAATTTAACCGTATCGTTAAA
ATAACTGAAGAAGTTATTAGATTCATCATCATTAAAGAATAA

Upstream 100 bases:

>100_bases
GTTATAATATTAATGTCTTGCAAAAAAATAAAAATAGGTACATGCTTATTCCTTGTCTTTATTACAATTATAAAGACCGC
ATAGACCGTAAGGAGAAAAA

Downstream 100 bases:

>100_bases
AAAATTGAGTAATTTTGGGACTCAAGAGTCCTTAAATGATTATTTTGTGAATTTTAAAATTATTAACAAAAGCAATAAGT
GAAGCAATAAAGAAATGAAA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKKYEIMYILRPNLDNNEVKKINDHLESVFSKKPSTILEKKEIGLKDLAYPINNHKKGYYYWFITQTDNEAVLEFNRIVK
ITEEVIRFIIIKE

Sequences:

>Translated_93_residues
MKKYEIMYILRPNLDNNEVKKINDHLESVFSKKPSTILEKKEIGLKDLAYPINNHKKGYYYWFITQTDNEAVLEFNRIVK
ITEEVIRFIIIKE
>Mature_93_residues
MKKYEIMYILRPNLDNNEVKKINDHLESVFSKKPSTILEKKEIGLKDLAYPINNHKKGYYYWFITQTDNEAVLEFNRIVK
ITEEVIRFIIIKE

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_PHYAS (B1V955)

Other databases:

- EMBL:   AM422018
- RefSeq:   YP_001798830.1
- ProteinModelPortal:   B1V955
- SMR:   B1V955
- GeneID:   6799354
- GenomeReviews:   AM422018_GR
- HOGENOM:   HBG747554
- OMA:   GIYHIVN
- ProtClustDB:   PRK00453
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020815
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 11208; Mature: 11208

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYEIMYILRPNLDNNEVKKINDHLESVFSKKPSTILEKKEIGLKDLAYPINNHKKGYY
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCCCCEEE
YWFITQTDNEAVLEFNRIVKITEEVIRFIIIKE
EEEEEECCCHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MKKYEIMYILRPNLDNNEVKKINDHLESVFSKKPSTILEKKEIGLKDLAYPINNHKKGYY
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCCCCEEE
YWFITQTDNEAVLEFNRIVKITEEVIRFIIIKE
EEEEEECCCHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA