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The map label for this gene is ssb [H]

Identifier: 197120336

GI number: 197120336

Start: 4511903

End: 4512343

Strand: Direct

Name: ssb [H]

Synonym: Gbem_3975

Alternate gene names: 197120336

Gene position: 4511903-4512343 (Clockwise)

Preceding gene: 197120326

Following gene: 308535393

Centisome position: 97.76

GC content: 60.09

Gene sequence:

>441_bases
ATGGCAAGTCTGAACAAGGTGATGCTCATCGGGAACCTGGGGAAAGACCCCGAGGTGCGCTACACCGCCGGCGGGACCGC
CGTAGCATCCTTCTCCGTCGCCACCACCGAGAAGTTCAAGGGCAAGGACGGCAACTGGGAAGAGAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTTGCCGAGATCGCCGGCGAGTATCTTTCCAAGGGGAAGACCGTATATATCGAAGGGCGT
CTGCAGACCCGCAAGTGGACCGACAAGGAAGGCAAAGACAGGTACACCACCGAGATCGTAGGCGAGAAGATGCAGATGCT
TTCCGCCAAAGGCGAAGGCGGCGGTGGTGGGCAGCGTCAGTCCAGGCCGCAGCAGGATTACAACCAGGGCGGCGGTTACG
AAGAGCCGGTATTCAACCCGGACGACGAGATCCCGTTCTAG

Upstream 100 bases:

>100_bases
CTGTGTTCCGCTTCCGTTTTGGCCGCAAAATATTGCTTTGCTAGAGGCGGGTTTTGATGTAGCATCGGCGCTCAATATTC
AAGCGAAAAGGAGAAAGCAT

Downstream 100 bases:

>100_bases
ACATATTAAGGAAAGAATAAAAGCCGCTACCGCCAAGGTCGCGGCTTTTGTCGTTTTGAGGCGGGTTGGGATTTAATAGT
AATGTGTCCCCGGAATTCCA

Product: single strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQSRPQQDYNQGGGYEEPVFNPDDEIPF

Sequences:

>Translated_146_residues
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQSRPQQDYNQGGGYEEPVFNPDDEIPF
>Mature_145_residues
ASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWARLAEIAGEYLSKGKTVYIEGRL
QTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQSRPQQDYNQGGGYEEPVFNPDDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=113, Percent_Identity=34.5132743362832, Blast_Score=74, Evalue=6e-14,
Organism=Escherichia coli, GI1790494, Length=179, Percent_Identity=45.8100558659218, Blast_Score=139, Evalue=7e-35,
Organism=Drosophila melanogaster, GI85725234, Length=103, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24647376, Length=103, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16255; Mature: 16124

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWAR
CCCCCEEEEEECCCCCCCEEEECCCCEEEEEEEECCHHHCCCCCCCCCCCCCCCHHHHHH
LAEIAGEYLSKGKTVYIEGRLQTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQ
HHHHHHHHHHCCCEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
SRPQQDYNQGGGYEEPVFNPDDEIPF
CCCCHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWAR
CCCCEEEEEECCCCCCCEEEECCCCEEEEEEEECCHHHCCCCCCCCCCCCCCCHHHHHH
LAEIAGEYLSKGKTVYIEGRLQTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQ
HHHHHHHHHHCCCEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
SRPQQDYNQGGGYEEPVFNPDDEIPF
CCCCHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]