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The map label for this gene is ycdX [C]

Identifier: 197120294

GI number: 197120294

Start: 4470141

End: 4470857

Strand: Direct

Name: ycdX [C]

Synonym: Gbem_3933

Alternate gene names: 197120294

Gene position: 4470141-4470857 (Clockwise)

Preceding gene: 197120293

Following gene: 197120297

Centisome position: 96.86

GC content: 60.53

Gene sequence:

>717_bases
ATGAAAATTCTTGCTGACATGCACACGCACACGCTCGCCTCAGGCCACGCCTACTCCACCATAAACGAACTTGCCCAGGC
CGCTGCTCAGGCAGGGCTGCAGGGGCTGGCCATTACCGACCACGGCCCGAGTCTTCCTGGAGGCCCGCACCGCTATCACT
TCAACGCCATGCGCTTCGTGCCGCAACGGATAGGCGGGGTTCGCATCTTCCGTGGGGTCGAGGCTAATATCATGGACCAA
CAGGGGACGCTCGATCTCGAGCAGCCTCTCCTGGAAGAGCTCGATTTCGTCATGGCGGGATTCCACGAGGACTGCGGCAT
CTGCGGACAGGACATAGACCGCAACACCCGCACGCTCCTGGCGGTGATGGAAAACCCCCGGGTAAAATGCATCTCCCATC
CGGGGAACCCCGTTTTCCCTCTGCGCTACGAAGAGATAGTAATGGGCGCGCTGGCCACCAGCACGGCCCTGGAGATCAAC
AATTCGTCACTGATGTCGGTGAGCCGCAAGGGGAGCGTCGGGAACTGCAGTGAAATTGCCAGGCTTTGCGCGCAGCTCGG
GGCTCCCATTATGGTGGGTAGCGACGCCCATATCGCTCAGGGCGTCGGCATCTTCGGCGATGCGCTTGAACTGATAGCGG
ACGCAGGGGTGGCTGAGGGGCAGATAATCAACGCCTCCTGGCAGAGGCTTCTGGATTTCCTGGAGATCGAGGAATAG

Upstream 100 bases:

>100_bases
GCCTCCACCTTCGCTGAAGCTGCCTCGGACAAAAACCTGCCTGACCTCTGCTCGCCCCTGCGCCTTGACTTTTTCCGACC
TGTGTGGAATATTCCAACCC

Downstream 100 bases:

>100_bases
CAGCCCGAAAGTGCGATTCAAGGAATAAGGAATAAATAGAAAAAGGCTTTCCGGTAACTCGCCGGAAAGCCTTTTCTGTT
GTTATCTCGAATCCCCTTCT

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKILADMHTHTLASGHAYSTINELAQAAAQAGLQGLAITDHGPSLPGGPHRYHFNAMRFVPQRIGGVRIFRGVEANIMDQ
QGTLDLEQPLLEELDFVMAGFHEDCGICGQDIDRNTRTLLAVMENPRVKCISHPGNPVFPLRYEEIVMGALATSTALEIN
NSSLMSVSRKGSVGNCSEIARLCAQLGAPIMVGSDAHIAQGVGIFGDALELIADAGVAEGQIINASWQRLLDFLEIEE

Sequences:

>Translated_238_residues
MKILADMHTHTLASGHAYSTINELAQAAAQAGLQGLAITDHGPSLPGGPHRYHFNAMRFVPQRIGGVRIFRGVEANIMDQ
QGTLDLEQPLLEELDFVMAGFHEDCGICGQDIDRNTRTLLAVMENPRVKCISHPGNPVFPLRYEEIVMGALATSTALEIN
NSSLMSVSRKGSVGNCSEIARLCAQLGAPIMVGSDAHIAQGVGIFGDALELIADAGVAEGQIINASWQRLLDFLEIEE
>Mature_238_residues
MKILADMHTHTLASGHAYSTINELAQAAAQAGLQGLAITDHGPSLPGGPHRYHFNAMRFVPQRIGGVRIFRGVEANIMDQ
QGTLDLEQPLLEELDFVMAGFHEDCGICGQDIDRNTRTLLAVMENPRVKCISHPGNPVFPLRYEEIVMGALATSTALEIN
NSSLMSVSRKGSVGNCSEIARLCAQLGAPIMVGSDAHIAQGVGIFGDALELIADAGVAEGQIINASWQRLLDFLEIEE

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=230, Percent_Identity=40.8695652173913, Blast_Score=177, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 25572; Mature: 25572

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILADMHTHTLASGHAYSTINELAQAAAQAGLQGLAITDHGPSLPGGPHRYHFNAMRFV
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHH
PQRIGGVRIFRGVEANIMDQQGTLDLEQPLLEELDFVMAGFHEDCGICGQDIDRNTRTLL
HHHHCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEE
AVMENPRVKCISHPGNPVFPLRYEEIVMGALATSTALEINNSSLMSVSRKGSVGNCSEIA
EEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEEEECCCHHEEEECCCCCCCHHHHH
RLCAQLGAPIMVGSDAHIAQGVGIFGDALELIADAGVAEGQIINASWQRLLDFLEIEE
HHHHHHCCCEEECCCCHHHHCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHCCC
>Mature Secondary Structure
MKILADMHTHTLASGHAYSTINELAQAAAQAGLQGLAITDHGPSLPGGPHRYHFNAMRFV
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHH
PQRIGGVRIFRGVEANIMDQQGTLDLEQPLLEELDFVMAGFHEDCGICGQDIDRNTRTLL
HHHHCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEE
AVMENPRVKCISHPGNPVFPLRYEEIVMGALATSTALEINNSSLMSVSRKGSVGNCSEIA
EEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEEEECCCHHEEEECCCCCCCHHHHH
RLCAQLGAPIMVGSDAHIAQGVGIFGDALELIADAGVAEGQIINASWQRLLDFLEIEE
HHHHHHCCCEEECCCCHHHHCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA