| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197120235
Identifier: 197120235
GI number: 197120235
Start: 4410605
End: 4411486
Strand: Direct
Name: 197120235
Synonym: Gbem_3874
Alternate gene names: NA
Gene position: 4410605-4411486 (Clockwise)
Preceding gene: 197120231
Following gene: 197120236
Centisome position: 95.57
GC content: 63.15
Gene sequence:
>882_bases ATGGAAAGAAGAAGTTTCATCAAGCTGCTCGGTCTTTGCTCGATCTTGCTGCCCGGTTCGCTGCGGGAACTTTTCGCCGC CCAAGGTCCGGTGGTAGCCGTTTCCCAAGGAAGCGACCACGCAGCCGCCGCGCGCAAGGCGATCGCCGCGCTGGGGGGGA TGCAGCGCTTCGTCAAGGCGGGGCAGACCGTCGTGGTCAAACCGAACATCGGCTGGGACCGGACGCCGGAATTCGCCGCC ACCACCAATCCGGCCGTAGTGAAAGCCCTCGTCGAGGAGTGCCTGAAGGCGGGGGCCAAGAAGGTAAAGGTCTTCGACCG TACCTGCAACGACGCCCGTCGCTGCTACGCCAGCAGCGGCATCGAGGCGGCACTGAAGGGAATGGAAAACGTCGAGGTAA AGCACCTGGAAGAGGAGCGCTTCAAGAAGGTGGCGTTGAACGGCAAGGCGCTCAAGGATTGCGAACTCTATGGCGAGGCG CTCTCCGCCGACGTCTACATCAACGTCCCGGTGGCAAAGCACCACGGACTGAGCCGCCTCACCCTGGGGATGAAGAACGT GATGGGGATCATGGGGGGCAACCGCGGCTCGATCCACAAGAACCTCGACCAGGCGCTGGCAGACGTGAACAGCTACTTCA AGCCCCAGCTCACCGTGATAGACGCCACCAGGATACTCACCGCCCACGGCCCCCAAGGGGGGAACCTGGCAGACGTCAAG GTCCTGAACCAGGTGATCGCCTCCACCGACATGGTCGCGGCCGACGCCTATGCCACCACGCTCTTCGGTTTGAAGCCCTC CGACATCGCCGTCACCAGGACGGCCTACCAGCGCGGGCTGGGGGAGATGAACCTGGACCGGATCAGGGTGGTCAAGGCAT GA
Upstream 100 bases:
>100_bases CACATGAGGCCAAGCATTTTTTCCGCCCGGATTGTCATGGCGCGATTTGTTCCTATAATGAGAGCTGGAAAAAATCACGC CAACCTGCTCCGGAGGCTCT
Downstream 100 bases:
>100_bases AGTTTCCGCGCCCCCCCCGCATCTCGCAGCTTTTCTTCCTCCTCCTCTTCCTGATCCTTTTCCTGATGACCGAGTACCGC GGCAGCGACCGGATCGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MERRSFIKLLGLCSILLPGSLRELFAAQGPVVAVSQGSDHAAAARKAIAALGGMQRFVKAGQTVVVKPNIGWDRTPEFAA TTNPAVVKALVEECLKAGAKKVKVFDRTCNDARRCYASSGIEAALKGMENVEVKHLEEERFKKVALNGKALKDCELYGEA LSADVYINVPVAKHHGLSRLTLGMKNVMGIMGGNRGSIHKNLDQALADVNSYFKPQLTVIDATRILTAHGPQGGNLADVK VLNQVIASTDMVAADAYATTLFGLKPSDIAVTRTAYQRGLGEMNLDRIRVVKA
Sequences:
>Translated_293_residues MERRSFIKLLGLCSILLPGSLRELFAAQGPVVAVSQGSDHAAAARKAIAALGGMQRFVKAGQTVVVKPNIGWDRTPEFAA TTNPAVVKALVEECLKAGAKKVKVFDRTCNDARRCYASSGIEAALKGMENVEVKHLEEERFKKVALNGKALKDCELYGEA LSADVYINVPVAKHHGLSRLTLGMKNVMGIMGGNRGSIHKNLDQALADVNSYFKPQLTVIDATRILTAHGPQGGNLADVK VLNQVIASTDMVAADAYATTLFGLKPSDIAVTRTAYQRGLGEMNLDRIRVVKA >Mature_293_residues MERRSFIKLLGLCSILLPGSLRELFAAQGPVVAVSQGSDHAAAARKAIAALGGMQRFVKAGQTVVVKPNIGWDRTPEFAA TTNPAVVKALVEECLKAGAKKVKVFDRTCNDARRCYASSGIEAALKGMENVEVKHLEEERFKKVALNGKALKDCELYGEA LSADVYINVPVAKHHGLSRLTLGMKNVMGIMGGNRGSIHKNLDQALADVNSYFKPQLTVIDATRILTAHGPQGGNLADVK VLNQVIASTDMVAADAYATTLFGLKPSDIAVTRTAYQRGLGEMNLDRIRVVKA
Specific function: Unknown
COG id: COG2006
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007160 [H]
Pfam domain/function: PF04015 DUF362 [H]
EC number: NA
Molecular weight: Translated: 31428; Mature: 31428
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRSFIKLLGLCSILLPGSLRELFAAQGPVVAVSQGSDHAAAARKAIAALGGMQRFVKA CCHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHC GQTVVVKPNIGWDRTPEFAATTNPAVVKALVEECLKAGAKKVKVFDRTCNDARRCYASSG CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCC IEAALKGMENVEVKHLEEERFKKVALNGKALKDCELYGEALSADVYINVPVAKHHGLSRL HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCHHHHCCCHHH TLGMKNVMGIMGGNRGSIHKNLDQALADVNSYFKPQLTVIDATRILTAHGPQGGNLADVK HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEECCCCCCCCHHHH VLNQVIASTDMVAADAYATTLFGLKPSDIAVTRTAYQRGLGEMNLDRIRVVKA HHHHHHHHCCHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCCCCCCEEEECC >Mature Secondary Structure MERRSFIKLLGLCSILLPGSLRELFAAQGPVVAVSQGSDHAAAARKAIAALGGMQRFVKA CCHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHC GQTVVVKPNIGWDRTPEFAATTNPAVVKALVEECLKAGAKKVKVFDRTCNDARRCYASSG CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCC IEAALKGMENVEVKHLEEERFKKVALNGKALKDCELYGEALSADVYINVPVAKHHGLSRL HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCHHHHCCCHHH TLGMKNVMGIMGGNRGSIHKNLDQALADVNSYFKPQLTVIDATRILTAHGPQGGNLADVK HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEECCCCCCCCHHHH VLNQVIASTDMVAADAYATTLFGLKPSDIAVTRTAYQRGLGEMNLDRIRVVKA HHHHHHHHCCHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]