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The map label for this gene is ispF [H]

Identifier: 197120159

GI number: 197120159

Start: 4336946

End: 4337434

Strand: Direct

Name: ispF [H]

Synonym: Gbem_3798

Alternate gene names: 197120159

Gene position: 4336946-4337434 (Clockwise)

Preceding gene: 197120158

Following gene: 197120160

Centisome position: 93.97

GC content: 66.67

Gene sequence:

>489_bases
ATGAGTCATATGCGTATCGGGCACGGTTACGACGTTCACAGGCTGGTGGAAGGGCGCAAGCTGATCCTCGGAGGGGTCGA
CGTCCCTTACGCCAAGGGGCTCCTCGGGCACTCCGACGCGGACGTACTTTTGCACGCCATCTCCGACGCCATCCTGGGAG
CCATCGGCGAGGGGGACATCGGCCGCCACTTCCCGGACACCGATCCCGCCTACAAGGGGGCCGACAGCATCAAGCTCCTG
CAGCACGTCATGGGGCTTGCCGACGCGAAGGGGTACCGCATCGGCAACGTCGACGCCACCGTCGTGGCCCAGCGTCCGAA
GCTGGCCCCTTTCATCCAACAGATGCGGCAGAACATCGCCCGGGCGCTCGCCACCGACGACGACCGGGTCAACGTGAAGG
CGACCACGACCGAGGAGCTCGGTTTCGCCGGCCGCGGCGAGGGGATCGCCGCCTACGGAGTCGCCTTGTTGGAGCGCAAG
GAGCGCTAG

Upstream 100 bases:

>100_bases
AGGGGGGAGAGGTGCGCATCGTCACGGGCGACTACCGCAACATCAAGATCACGACGCCCGAGGACCTGGTCCTTGCCGAG
GCGTTTTTGAAAGGAAAGGG

Downstream 100 bases:

>100_bases
CGGGAGAAGGAGAGCGTGGAGACAAGGCAGCGCTCTGCGACATGGGCGCGCATCATGAAAAACCAATACACTTCGCGCCG
CGATTTTGGCGCAAAGGAAC

Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Products: NA

Alternate protein names: MECDP-synthase; MECPS [H]

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSHMRIGHGYDVHRLVEGRKLILGGVDVPYAKGLLGHSDADVLLHAISDAILGAIGEGDIGRHFPDTDPAYKGADSIKLL
QHVMGLADAKGYRIGNVDATVVAQRPKLAPFIQQMRQNIARALATDDDRVNVKATTTEELGFAGRGEGIAAYGVALLERK
ER

Sequences:

>Translated_162_residues
MSHMRIGHGYDVHRLVEGRKLILGGVDVPYAKGLLGHSDADVLLHAISDAILGAIGEGDIGRHFPDTDPAYKGADSIKLL
QHVMGLADAKGYRIGNVDATVVAQRPKLAPFIQQMRQNIARALATDDDRVNVKATTTEELGFAGRGEGIAAYGVALLERK
ER
>Mature_161_residues
SHMRIGHGYDVHRLVEGRKLILGGVDVPYAKGLLGHSDADVLLHAISDAILGAIGEGDIGRHFPDTDPAYKGADSIKLLQ
HVMGLADAKGYRIGNVDATVVAQRPKLAPFIQQMRQNIARALATDDDRVNVKATTTEELGFAGRGEGIAAYGVALLERKE
R

Specific function: Converts 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) and CMP [H]

COG id: COG0245

COG function: function code I; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ispF family [H]

Homologues:

Organism=Escherichia coli, GI1789103, Length=159, Percent_Identity=59.748427672956, Blast_Score=178, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003526
- InterPro:   IPR020555 [H]

Pfam domain/function: PF02542 YgbB [H]

EC number: =4.6.1.12 [H]

Molecular weight: Translated: 17406; Mature: 17275

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS01350 ISPF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHMRIGHGYDVHRLVEGRKLILGGVDVPYAKGLLGHSDADVLLHAISDAILGAIGEGDI
CCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
GRHFPDTDPAYKGADSIKLLQHVMGLADAKGYRIGNVDATVVAQRPKLAPFIQQMRQNIA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHH
RALATDDDRVNVKATTTEELGFAGRGEGIAAYGVALLERKER
HHHCCCCCCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SHMRIGHGYDVHRLVEGRKLILGGVDVPYAKGLLGHSDADVLLHAISDAILGAIGEGDI
CCCCCCCCCCHHHHHCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
GRHFPDTDPAYKGADSIKLLQHVMGLADAKGYRIGNVDATVVAQRPKLAPFIQQMRQNIA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHH
RALATDDDRVNVKATTTEELGFAGRGEGIAAYGVALLERKER
HHHCCCCCCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA