| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is rrmA [C]
Identifier: 197120092
GI number: 197120092
Start: 4257347
End: 4258243
Strand: Direct
Name: rrmA [C]
Synonym: Gbem_3731
Alternate gene names: 197120092
Gene position: 4257347-4258243 (Clockwise)
Preceding gene: 197120091
Following gene: 197120093
Centisome position: 92.25
GC content: 53.4
Gene sequence:
>897_bases ATGTACGTAGCTTACAACGACTTCAAGAGGCTGTCCGAAGGGGACGAGATCAAGGACTACAAGAAATTCTATCGTAAGCT CTCCAATACAATCGAGTTCGGCGGCGCCTTCACCAATTACGACTTCCTGGTCAAGTATCGGTTCATGAACATCTTCCAAA ACGTCTACAACGTGGTGCTGAGAAGGCACCCTTCGAACATCCTCGACATAGGATGCGGCAACGGCGTGAACCTCCCCTTG AGCAACGTCTTCAAGTTCGTGGATTACCACGGGCTGGACTACGCGGACAAGGCCATCGAGAACGCGCAGAAGGAATACCC CAACGTGACCTTCCACGTGCAGGATGCCTTCAACACGGATTTCGAGGACAAGAGCTTCGACATGATCATCCTCGCCAGCG TCCTGATCCTGTATCGCGAGGAGAAGGACCGTGTCAACCTTTTGACCGAGATCAAGCGCATCCTCGCCGACGACGGCGTC TTCGTCCTGGTAGTCTGGAAGGAGAGCCTTTTCCTTAAGGCCTCGATGCAGTTTTCCCGGGCGCTGGGAAAGCTGCTAGG GCAGAACGTTCCCAACGACTTCATGGCAGTCTACTTCTCCACACGTGACATCGCGAAGCTGGCCAAGAAGGTGGATCTGA AGATATCCGAGACCATCCATACCGCACCGCTCTACGGGGTACTGGAAAGCGTACGGCATCTCAACATGTCCAAGTTCAAC AGGAAATACGGCAAAAGCGAGAGCGAGTCGGCCAAGATCCACAGCCAGACCATACTGAAGGACCTCCAGGACCAGGCTGG CAGCATGAAATCACTCACCAGCCTCTTCTACTACCTGGCGAAGCTGTTCCCTAACATGTTTTCGCACTACTCGGTCTACG TGATGGAGAAGAAGTAG
Upstream 100 bases:
>100_bases GCCGAAAACGCCGGACAAAGGATAGGGGCCGCCTACGCGGAAGTGTTCGAGCTGGTGAAGTGGCTGGAAGACTGAGAAAA ACAGACAAGGAGATCATCCA
Downstream 100 bases:
>100_bases CCCGAGCCACGGCACACAACCGGAGGAGCAAAATGGTTTTTATAGGTGTTATCGAAGCGCGCATGGGATCGAGCCGGCTC CCCGGCAAGACGCTCACGGC
Product: type 11 SAM-dependent methyltransferase
Products: S-adenosyl-L-homocysteine +rRNA containing Nmethylguanine [C]
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MYVAYNDFKRLSEGDEIKDYKKFYRKLSNTIEFGGAFTNYDFLVKYRFMNIFQNVYNVVLRRHPSNILDIGCGNGVNLPL SNVFKFVDYHGLDYADKAIENAQKEYPNVTFHVQDAFNTDFEDKSFDMIILASVLILYREEKDRVNLLTEIKRILADDGV FVLVVWKESLFLKASMQFSRALGKLLGQNVPNDFMAVYFSTRDIAKLAKKVDLKISETIHTAPLYGVLESVRHLNMSKFN RKYGKSESESAKIHSQTILKDLQDQAGSMKSLTSLFYYLAKLFPNMFSHYSVYVMEKK
Sequences:
>Translated_298_residues MYVAYNDFKRLSEGDEIKDYKKFYRKLSNTIEFGGAFTNYDFLVKYRFMNIFQNVYNVVLRRHPSNILDIGCGNGVNLPL SNVFKFVDYHGLDYADKAIENAQKEYPNVTFHVQDAFNTDFEDKSFDMIILASVLILYREEKDRVNLLTEIKRILADDGV FVLVVWKESLFLKASMQFSRALGKLLGQNVPNDFMAVYFSTRDIAKLAKKVDLKISETIHTAPLYGVLESVRHLNMSKFN RKYGKSESESAKIHSQTILKDLQDQAGSMKSLTSLFYYLAKLFPNMFSHYSVYVMEKK >Mature_298_residues MYVAYNDFKRLSEGDEIKDYKKFYRKLSNTIEFGGAFTNYDFLVKYRFMNIFQNVYNVVLRRHPSNILDIGCGNGVNLPL SNVFKFVDYHGLDYADKAIENAQKEYPNVTFHVQDAFNTDFEDKSFDMIILASVLILYREEKDRVNLLTEIKRILADDGV FVLVVWKESLFLKASMQFSRALGKLLGQNVPNDFMAVYFSTRDIAKLAKKVDLKISETIHTAPLYGVLESVRHLNMSKFN RKYGKSESESAKIHSQTILKDLQDQAGSMKSLTSLFYYLAKLFPNMFSHYSVYVMEKK
Specific function: Specifically Methylates The Guanosine In Position 745 Of 23s rRNA. [C]
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.1.1.51 [C]
Molecular weight: Translated: 34576; Mature: 34576
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVAYNDFKRLSEGDEIKDYKKFYRKLSNTIEFGGAFTNYDFLVKYRFMNIFQNVYNVVL CEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH RRHPSNILDIGCGNGVNLPLSNVFKFVDYHGLDYADKAIENAQKEYPNVTFHVQDAFNTD HHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC FEDKSFDMIILASVLILYREEKDRVNLLTEIKRILADDGVFVLVVWKESLFLKASMQFSR CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH ALGKLLGQNVPNDFMAVYFSTRDIAKLAKKVDLKISETIHTAPLYGVLESVRHLNMSKFN HHHHHHCCCCCCHHHEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHH RKYGKSESESAKIHSQTILKDLQDQAGSMKSLTSLFYYLAKLFPNMFSHYSVYVMEKK HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC >Mature Secondary Structure MYVAYNDFKRLSEGDEIKDYKKFYRKLSNTIEFGGAFTNYDFLVKYRFMNIFQNVYNVVL CEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH RRHPSNILDIGCGNGVNLPLSNVFKFVDYHGLDYADKAIENAQKEYPNVTFHVQDAFNTD HHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC FEDKSFDMIILASVLILYREEKDRVNLLTEIKRILADDGVFVLVVWKESLFLKASMQFSR CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH ALGKLLGQNVPNDFMAVYFSTRDIAKLAKKVDLKISETIHTAPLYGVLESVRHLNMSKFN HHHHHHCCCCCCHHHEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHH RKYGKSESESAKIHSQTILKDLQDQAGSMKSLTSLFYYLAKLFPNMFSHYSVYVMEKK HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Unidentified protein factor B [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S-Adenosyl-L-methionine; rRNA [C]
Specific reaction: S-Adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine +rRNA containing Nmethylguanine [C]
General reaction: Methyl group transfer [C]
Inhibitor: Mg2+; Unidentified protein factor A1 [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA