| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119175
Identifier: 197119175
GI number: 197119175
Start: 3231434
End: 3232717
Strand: Direct
Name: 197119175
Synonym: Gbem_2802
Alternate gene names: NA
Gene position: 3231434-3232717 (Clockwise)
Preceding gene: 197119174
Following gene: 197119176
Centisome position: 70.02
GC content: 61.84
Gene sequence:
>1284_bases ATGAGCAGGTACAATGCAATGCGGGAAATTCCCGCTACTGCCGGATTCAAGGAAGGGGACGTATTTTTTCTCTGCGGCGA GCTCTTCGGCCGCGGCTATGCCAACGGCATCGTCGACGAGGCAAGGGCCAAGGGGATGACCATCATCGGGGCCACCGTAG GCCGCCGCGACAACGACGGGACCCTGCGCCCGCTCAACGCCGAGGAACTGGCAGCGGCAGAAGAGAACCTGGGCGGCAAG ATCATCAACATCCCGCTGGAAGCCGGCTTCGACATGGAGCCGGGTAGCGACGGAATCGCACCGGTGGACAGGTTCAAAGG CGTTAAACCTGACGAGTGGGCCTCGGTGAAACTGGACCAGGCCGAAGTCGAATTTTCCAAAAAGCGCGGCACCGAGCGTT TCTGCAAGAACCTCGCGGCTGTGGTGGCAGAAGTTGAGAAGATGCTCCCGGCCAAGGGGCGCCTCCTCGTGGTGCACACC ATGGCGGGCGGCATCCCCAGGGCGCGCGTCTTCATGCCGATTCTCAACAAGCTCTTCAAGGGGCAGGGAGACCGCTTCCT CTCCTCCGAAGCCTTCTGGAACTCCGACATGGGGCGCCTTTGCGACGCGAGCTTCAACGAAGTGACCGCCGACACCTTCC GCTACCTGATCGACGCCACCGCGGGCCTCAGGGAGAAGCTCGAAGTAACCTACGCGGCCTACGGCTACCACGGCACCGGC GTACTCATCGACGGCGTCGTCACCTGGCAGTCTTACACCCCCTACCTGCAGGGGTGGGCGAAGATCCGCCTGGAAGACAT CGCCATCGAGGCATGGGAAAAAGGGATCAAGGCAACCGTCTACAACTGCCCGGAGATCCTCACCAACTCCAGCGCCCTCT TCCTCGGGGTCGAGAATTCCCTCTATCCGCTGATGGACGCGCTCAGGGCCGAAGGGGAGCAGAAGATCGTCAAGGAGTGC GCGGCGCTCTTGAAGGAAGGGGCCACCGTCGACACGCTGCTCGGCATCGCCAACACCTACCTCACCTCGGAACTCGTCAC CAGCACCCGGGACTTCGACAGCTGGCCGCAGCACAACAAGCCGCAACAGCAGGAGTACATGCTGAACGTATCGGCGGAGC TGATCAGCCTGAACGCGGACCCCAAGGAGATCGTCTGCGCCGTCCTCTCCAAGGGCGTGTTCCAGGGGGTAGGAAAACTG ATGTTCGACAGCTCCTGGGAGCCGAAGGCCCCGGTATTCTGGCTGAACCACGACGTGATCGCCAAGACGCTGGTAAAGAT GTAG
Upstream 100 bases:
>100_bases CCGCTCCCCCCGCCTTCCAGTGGAAGTGGGGTGGAAGCGCCATGCAAGTGCGGAGGGCGACTAAGCCTCCCGCGTATTTT CAACCAAGAAAGGAAACTAA
Downstream 100 bases:
>100_bases TGAATTGAGTCCCCCTCCCGTCAAGGGAGGGGGAGAGCTGGCCAAAGGGGAGTTTTGCGGAGGCTCGGCTGAAGATGTCG CAAATGAAGTTATGCAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MSRYNAMREIPATAGFKEGDVFFLCGELFGRGYANGIVDEARAKGMTIIGATVGRRDNDGTLRPLNAEELAAAEENLGGK IINIPLEAGFDMEPGSDGIAPVDRFKGVKPDEWASVKLDQAEVEFSKKRGTERFCKNLAAVVAEVEKMLPAKGRLLVVHT MAGGIPRARVFMPILNKLFKGQGDRFLSSEAFWNSDMGRLCDASFNEVTADTFRYLIDATAGLREKLEVTYAAYGYHGTG VLIDGVVTWQSYTPYLQGWAKIRLEDIAIEAWEKGIKATVYNCPEILTNSSALFLGVENSLYPLMDALRAEGEQKIVKEC AALLKEGATVDTLLGIANTYLTSELVTSTRDFDSWPQHNKPQQQEYMLNVSAELISLNADPKEIVCAVLSKGVFQGVGKL MFDSSWEPKAPVFWLNHDVIAKTLVKM
Sequences:
>Translated_427_residues MSRYNAMREIPATAGFKEGDVFFLCGELFGRGYANGIVDEARAKGMTIIGATVGRRDNDGTLRPLNAEELAAAEENLGGK IINIPLEAGFDMEPGSDGIAPVDRFKGVKPDEWASVKLDQAEVEFSKKRGTERFCKNLAAVVAEVEKMLPAKGRLLVVHT MAGGIPRARVFMPILNKLFKGQGDRFLSSEAFWNSDMGRLCDASFNEVTADTFRYLIDATAGLREKLEVTYAAYGYHGTG VLIDGVVTWQSYTPYLQGWAKIRLEDIAIEAWEKGIKATVYNCPEILTNSSALFLGVENSLYPLMDALRAEGEQKIVKEC AALLKEGATVDTLLGIANTYLTSELVTSTRDFDSWPQHNKPQQQEYMLNVSAELISLNADPKEIVCAVLSKGVFQGVGKL MFDSSWEPKAPVFWLNHDVIAKTLVKM >Mature_426_residues SRYNAMREIPATAGFKEGDVFFLCGELFGRGYANGIVDEARAKGMTIIGATVGRRDNDGTLRPLNAEELAAAEENLGGKI INIPLEAGFDMEPGSDGIAPVDRFKGVKPDEWASVKLDQAEVEFSKKRGTERFCKNLAAVVAEVEKMLPAKGRLLVVHTM AGGIPRARVFMPILNKLFKGQGDRFLSSEAFWNSDMGRLCDASFNEVTADTFRYLIDATAGLREKLEVTYAAYGYHGTGV LIDGVVTWQSYTPYLQGWAKIRLEDIAIEAWEKGIKATVYNCPEILTNSSALFLGVENSLYPLMDALRAEGEQKIVKECA ALLKEGATVDTLLGIANTYLTSELVTSTRDFDSWPQHNKPQQQEYMLNVSAELISLNADPKEIVCAVLSKGVFQGVGKLM FDSSWEPKAPVFWLNHDVIAKTLVKM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47018; Mature: 46887
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRYNAMREIPATAGFKEGDVFFLCGELFGRGYANGIVDEARAKGMTIIGATVGRRDNDG CCHHHHHHHCCCCCCCCCCCEEEEEHHHHCCCHHCCHHHHHHHCCEEEEEEECCCCCCCC TLRPLNAEELAAAEENLGGKIINIPLEAGFDMEPGSDGIAPVDRFKGVKPDEWASVKLDQ CCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECH AEVEFSKKRGTERFCKNLAAVVAEVEKMLPAKGRLLVVHTMAGGIPRARVFMPILNKLFK HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC GQGDRFLSSEAFWNSDMGRLCDASFNEVTADTFRYLIDATAGLREKLEVTYAAYGYHGTG CCCCCEECCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCC VLIDGVVTWQSYTPYLQGWAKIRLEDIAIEAWEKGIKATVYNCPEILTNSSALFLGVENS EEEEEEEECCCCCHHHHHHHHEEHHHHHHHHHHCCCCEEEECCHHHHCCCCEEEEEECCC LYPLMDALRAEGEQKIVKECAALLKEGATVDTLLGIANTYLTSELVTSTRDFDSWPQHNK HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PQQQEYMLNVSAELISLNADPKEIVCAVLSKGVFQGVGKLMFDSSWEPKAPVFWLNHDVI CCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHH AKTLVKM HHHHHCC >Mature Secondary Structure SRYNAMREIPATAGFKEGDVFFLCGELFGRGYANGIVDEARAKGMTIIGATVGRRDNDG CHHHHHHHCCCCCCCCCCCEEEEEHHHHCCCHHCCHHHHHHHCCEEEEEEECCCCCCCC TLRPLNAEELAAAEENLGGKIINIPLEAGFDMEPGSDGIAPVDRFKGVKPDEWASVKLDQ CCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECH AEVEFSKKRGTERFCKNLAAVVAEVEKMLPAKGRLLVVHTMAGGIPRARVFMPILNKLFK HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC GQGDRFLSSEAFWNSDMGRLCDASFNEVTADTFRYLIDATAGLREKLEVTYAAYGYHGTG CCCCCEECCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCC VLIDGVVTWQSYTPYLQGWAKIRLEDIAIEAWEKGIKATVYNCPEILTNSSALFLGVENS EEEEEEEECCCCCHHHHHHHHEEHHHHHHHHHHCCCCEEEECCHHHHCCCCEEEEEECCC LYPLMDALRAEGEQKIVKECAALLKEGATVDTLLGIANTYLTSELVTSTRDFDSWPQHNK HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PQQQEYMLNVSAELISLNADPKEIVCAVLSKGVFQGVGKLMFDSSWEPKAPVFWLNHDVI CCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHH AKTLVKM HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA