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The map label for this gene is ychF [H]

Identifier: 197119138

GI number: 197119138

Start: 3193020

End: 3194114

Strand: Reverse

Name: ychF [H]

Synonym: Gbem_2765

Alternate gene names: 197119138

Gene position: 3194114-3193020 (Counterclockwise)

Preceding gene: 197119139

Following gene: 197119137

Centisome position: 69.21

GC content: 61.64

Gene sequence:

>1095_bases
ATGGGTTTCAATTGCGGTATCGTCGGCCTCCCCAACGTGGGGAAGTCCACCATCTTCAACGCGCTCACCTCGGCCGGGGC
CGAGTCCGCCAACTACCCCTTCTGCACCATCGATCCCAACGTCGGCATCGTCGCGGTTCCGGATCCGCGCATGGACAGGC
TCGCCGAGATCGTACACCCGGAGCGGATGCAGCCGACCACCATCGAGTTCCTCGACATCGCGGGGCTGGTCAAAGGCGCA
AGCCAAGGTGAGGGGCTGGGGAACAAGTTCCTGGGGCACATCCGTTCCGTCGACGCAATCCTGCACGTGGTGCGCTGCTT
CGACAACGAGAACGTGGTGCACGTAAGCGGCAGCGTTTCGCCGGTGCGCGACATCGAGGTGATCCAGACCGAACTGGCGC
TGGCAGACCTGGACACGGTGGAAAAGCGCCTGCAGCGTACCGAGAAACAGGCCAGAAGCGGCGACAAGAAGGCGAAGGAA
GACGTAGATTTCTGCCTCAAGGTGAAATCCACCCTGGAGCAGGGGCTCTCGCCGCGCGACATGGCCGAGACCGAGGACGA
GAAGCTGATACTGCGCGACATGCACCTCATGACGGCCAAACCGGTTCTTTACGTGGCGAACGTGGCCGAGGACGACCTGG
AAGGGAAGCACCCCTACGTCGAGGAAGTGCGCCAGCTGGCAGCGAAGGAAGGAAACGGCGTCGTCTTCATCTGCGGCTCC
ATCGAGGCCGAGATTTCCGAACTGGAAGGCGAGGAGAAACAGGCGTTTCTAGAGGAAATGGGGCTGGCGGAGTCGGGCCT
TGACCGTCTGATCCGTTCCGGCTACGAGCTTTTGGGCCTGATCACCTACTTCACCGCCGGTGTCAAGGAAGTCCGCGCCT
GGACCATCACCAAGGGAACCAAGGCTCCCGGAGCCGCGGGCGTCATCCACTCCGACTTCGAAAAGGGCTTCATCCGCGCC
GAGGTAATCGCTTACCAGGATTACATCGCCTCCGGCGGCGAGGCCGGCGCCAAGGAGAAGGGGCTCATGCGGCTGGAAGG
TAAAGAATACGTGGTGCAAGACGGCGACGTGATGCACTTCAGGTTTAACGTCTAA

Upstream 100 bases:

>100_bases
AATGAGCATCTTCAACGCCAGGTAGCAGATCCCCACTTCACGAAGGTGGACTTTATAGCACTCCCCCCGGCAATGGGTTG
AGTTTTCAAAAGGATACGTC

Downstream 100 bases:

>100_bases
AAGGCAGATTAAGATTGAGATTAAGATTGAGGAAAGGCGGGGTTAGGGGAGGCAGGTAGAGATAAAGATAGAGATTAAGG
AAAGGCGGACTGCAGAGGCG

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MGFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVAVPDPRMDRLAEIVHPERMQPTTIEFLDIAGLVKGA
SQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSVSPVRDIEVIQTELALADLDTVEKRLQRTEKQARSGDKKAKE
DVDFCLKVKSTLEQGLSPRDMAETEDEKLILRDMHLMTAKPVLYVANVAEDDLEGKHPYVEEVRQLAAKEGNGVVFICGS
IEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWTITKGTKAPGAAGVIHSDFEKGFIRA
EVIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDGDVMHFRFNV

Sequences:

>Translated_364_residues
MGFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVAVPDPRMDRLAEIVHPERMQPTTIEFLDIAGLVKGA
SQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSVSPVRDIEVIQTELALADLDTVEKRLQRTEKQARSGDKKAKE
DVDFCLKVKSTLEQGLSPRDMAETEDEKLILRDMHLMTAKPVLYVANVAEDDLEGKHPYVEEVRQLAAKEGNGVVFICGS
IEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWTITKGTKAPGAAGVIHSDFEKGFIRA
EVIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDGDVMHFRFNV
>Mature_363_residues
GFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVAVPDPRMDRLAEIVHPERMQPTTIEFLDIAGLVKGAS
QGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSVSPVRDIEVIQTELALADLDTVEKRLQRTEKQARSGDKKAKED
VDFCLKVKSTLEQGLSPRDMAETEDEKLILRDMHLMTAKPVLYVANVAEDDLEGKHPYVEEVRQLAAKEGNGVVFICGSI
EAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWTITKGTKAPGAAGVIHSDFEKGFIRAE
VIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDGDVMHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=365, Percent_Identity=45.4794520547945, Blast_Score=321, Evalue=5e-88,
Organism=Homo sapiens, GI58761502, Length=227, Percent_Identity=40.9691629955947, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI24308117, Length=102, Percent_Identity=39.2156862745098, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1787454, Length=364, Percent_Identity=60.7142857142857, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1789574, Length=139, Percent_Identity=32.3741007194245, Blast_Score=75, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17509631, Length=362, Percent_Identity=45.3038674033149, Blast_Score=312, Evalue=2e-85,
Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=42.1621621621622, Blast_Score=280, Evalue=4e-76,
Organism=Saccharomyces cerevisiae, GI6321773, Length=378, Percent_Identity=36.7724867724868, Blast_Score=226, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24640873, Length=365, Percent_Identity=45.2054794520548, Blast_Score=308, Evalue=3e-84,
Organism=Drosophila melanogaster, GI24640877, Length=365, Percent_Identity=45.2054794520548, Blast_Score=308, Evalue=3e-84,
Organism=Drosophila melanogaster, GI24640875, Length=365, Percent_Identity=45.2054794520548, Blast_Score=308, Evalue=3e-84,
Organism=Drosophila melanogaster, GI24640879, Length=327, Percent_Identity=43.1192660550459, Blast_Score=256, Evalue=2e-68,
Organism=Drosophila melanogaster, GI24585318, Length=143, Percent_Identity=31.4685314685315, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39744; Mature: 39613

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVAVPDPRMDRLAEIVHP
CCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
ERMQPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSVS
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PVRDIEVIQTELALADLDTVEKRLQRTEKQARSGDKKAKEDVDFCLKVKSTLEQGLSPRD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
MAETEDEKLILRDMHLMTAKPVLYVANVAEDDLEGKHPYVEEVRQLAAKEGNGVVFICGS
CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
IEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWTITKGT
CHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
KAPGAAGVIHSDFEKGFIRAEVIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDGDVMHF
CCCCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCEEEE
RFNV
EECC
>Mature Secondary Structure 
GFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVAVPDPRMDRLAEIVHP
CCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
ERMQPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSVS
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PVRDIEVIQTELALADLDTVEKRLQRTEKQARSGDKKAKEDVDFCLKVKSTLEQGLSPRD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
MAETEDEKLILRDMHLMTAKPVLYVANVAEDDLEGKHPYVEEVRQLAAKEGNGVVFICGS
CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
IEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWTITKGT
CHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
KAPGAAGVIHSDFEKGFIRAEVIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDGDVMHF
CCCCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCEEEE
RFNV
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA