| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119108
Identifier: 197119108
GI number: 197119108
Start: 3162286
End: 3163758
Strand: Reverse
Name: 197119108
Synonym: Gbem_2735
Alternate gene names: NA
Gene position: 3163758-3162286 (Counterclockwise)
Preceding gene: 197119109
Following gene: 197119107
Centisome position: 68.55
GC content: 57.91
Gene sequence:
>1473_bases ATGCCAGTTCTCAGGAAGTTCATAACGGCATCCTTGTTGATGCTTGCCTTTGCAGGCTCAAGCAGTGCCGGCGAGGGGGA TGGTGCGGTCGAGCGGGGCAAAGGTACCATCTTTACCCTTTGGCCGCTCGTGGACTACCGGGAAAGCCCGGCTGAAGGTT TCAGCAACCTCTCGCTTCTGGGTCCCATCGTGAAGTACCAGAAAAAGGGGGAAGACACCGACTTCGCCATACGTCCCTTC TTCTACACCAGCAGCCATACGACGGAGAAGTCGGACTCCACCTATTACCTTTACCCACTGGCGTACCACGAGAGTACCCC CGAGTCAGACACCTCGACGGCGCTGCAGCTCTTCCGCAAGACCACCTACCGGAAACAGGAGGGGGCGGAACAGGAAAAGT CGACCATGCTTTTCCCCTTCTACGTCTCCGGAACGTCTGCCAAGTACGGCCCTTACCGCGCCTTCTTCCCCTTCTACGGC GACACGTACGAGCGCTTCTGGCGCGACGAGTACCACTTCGTCCTGTTTCCGCTTTACGGTTCGGCGGTGAAAAAAGGGAC CACCACCAAGCACTACCTCTGGCCTATCTTCTCCAGTACAAAAGGGGATAAGGAAGACGGCTTCGAGGTGTTCCCGCTCT ACGGCCAGTCGCAAAAAGAAGGGGTGTACCAGAAGCGCTTCGTGCTCTGGCCTTTCTACCTGTCCGAGAAGTCGGGGCTA GATACGGACAACCCGACGCAGAAAAAGACCTTCTTCCCCCTCTACGCCTCGACCGATTCGCCTATGATGACCTCGCGCAC CTACCTCTGGCCCTTCTTCGGCTATACGGAGAACCGCGAGAAGAAGTACGAGGAGGTCAATTACCTCTGGCCCCTGGTCG GCACGGTGCGAGGCGAAAACAGGAGCAAGGACTCCTACCTTCCCTTCTATTCGCACGAAACGCGTCCCGAGTGGGAGAAA AGCTGGTACTTCTGGCCCATCTACAAGCACGAGGAGATCAAATCCGATATCTTCCGTCAGGAGATCGACCGCGTGCTCTT CTTCTTGTACCGGAGCAACCACGAGTACTGGCCCAAGGACGGCCAGGACAGGCAGCGCACCGCGGTTTGGCCCCTTTTCC TTTACAAAAGGACCACCGACGGGGTCTCCTCCGTCTCGCTTCCGGCACCGGTGGAATCCATACTAGACAAGGAAGGGATC GAGAAGAACTGGGCGCCTTTGTGGCGCATCTACCAGCGCCGCTGGGACCAGGCCGGGAACTCGGCCTCCACGCTTTTCTG GAACCTGTACTGGCATGAAAGGCGCGGCGACGAGCTGGCCTATGAGCTCTTCCCGCTCATCTCCTACCGCAACACCAAGT CAGAGCGGGAGCTCAAACTGTTGAAGGGGCTGATCAGCCTGAAGCGCAACGGCGAAGAAGAGGACCTGAGCCTTTTGTGG CTCCCCTTCGGCCTCAAATGGGGGCATAAGTGA
Upstream 100 bases:
>100_bases GTCAGCGGGGCGGCCACCATATATTTTGGTTGACTAGGCGCGACGGCAGCAGTTACTATCCGGTGCTGTCCCTTTAACGA AAGGTTACTAGAAGAGGTTC
Downstream 100 bases:
>100_bases CGCAATTTCTGGAACCGCTCGGCAAACGGGTGCTTTATTTCAACCAGGTGCTGGGGGAGATGGTCATCCTCCAGGGAAAG ATACTCTACTTCCTGCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MPVLRKFITASLLMLAFAGSSSAGEGDGAVERGKGTIFTLWPLVDYRESPAEGFSNLSLLGPIVKYQKKGEDTDFAIRPF FYTSSHTTEKSDSTYYLYPLAYHESTPESDTSTALQLFRKTTYRKQEGAEQEKSTMLFPFYVSGTSAKYGPYRAFFPFYG DTYERFWRDEYHFVLFPLYGSAVKKGTTTKHYLWPIFSSTKGDKEDGFEVFPLYGQSQKEGVYQKRFVLWPFYLSEKSGL DTDNPTQKKTFFPLYASTDSPMMTSRTYLWPFFGYTENREKKYEEVNYLWPLVGTVRGENRSKDSYLPFYSHETRPEWEK SWYFWPIYKHEEIKSDIFRQEIDRVLFFLYRSNHEYWPKDGQDRQRTAVWPLFLYKRTTDGVSSVSLPAPVESILDKEGI EKNWAPLWRIYQRRWDQAGNSASTLFWNLYWHERRGDELAYELFPLISYRNTKSERELKLLKGLISLKRNGEEEDLSLLW LPFGLKWGHK
Sequences:
>Translated_490_residues MPVLRKFITASLLMLAFAGSSSAGEGDGAVERGKGTIFTLWPLVDYRESPAEGFSNLSLLGPIVKYQKKGEDTDFAIRPF FYTSSHTTEKSDSTYYLYPLAYHESTPESDTSTALQLFRKTTYRKQEGAEQEKSTMLFPFYVSGTSAKYGPYRAFFPFYG DTYERFWRDEYHFVLFPLYGSAVKKGTTTKHYLWPIFSSTKGDKEDGFEVFPLYGQSQKEGVYQKRFVLWPFYLSEKSGL DTDNPTQKKTFFPLYASTDSPMMTSRTYLWPFFGYTENREKKYEEVNYLWPLVGTVRGENRSKDSYLPFYSHETRPEWEK SWYFWPIYKHEEIKSDIFRQEIDRVLFFLYRSNHEYWPKDGQDRQRTAVWPLFLYKRTTDGVSSVSLPAPVESILDKEGI EKNWAPLWRIYQRRWDQAGNSASTLFWNLYWHERRGDELAYELFPLISYRNTKSERELKLLKGLISLKRNGEEEDLSLLW LPFGLKWGHK >Mature_489_residues PVLRKFITASLLMLAFAGSSSAGEGDGAVERGKGTIFTLWPLVDYRESPAEGFSNLSLLGPIVKYQKKGEDTDFAIRPFF YTSSHTTEKSDSTYYLYPLAYHESTPESDTSTALQLFRKTTYRKQEGAEQEKSTMLFPFYVSGTSAKYGPYRAFFPFYGD TYERFWRDEYHFVLFPLYGSAVKKGTTTKHYLWPIFSSTKGDKEDGFEVFPLYGQSQKEGVYQKRFVLWPFYLSEKSGLD TDNPTQKKTFFPLYASTDSPMMTSRTYLWPFFGYTENREKKYEEVNYLWPLVGTVRGENRSKDSYLPFYSHETRPEWEKS WYFWPIYKHEEIKSDIFRQEIDRVLFFLYRSNHEYWPKDGQDRQRTAVWPLFLYKRTTDGVSSVSLPAPVESILDKEGIE KNWAPLWRIYQRRWDQAGNSASTLFWNLYWHERRGDELAYELFPLISYRNTKSERELKLLKGLISLKRNGEEEDLSLLWL PFGLKWGHK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57811; Mature: 57679
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLRKFITASLLMLAFAGSSSAGEGDGAVERGKGTIFTLWPLVDYRESPAEGFSNLSLL CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCHHHHCCHHHH GPIVKYQKKGEDTDFAIRPFFYTSSHTTEKSDSTYYLYPLAYHESTPESDTSTALQLFRK HHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH TTYRKQEGAEQEKSTMLFPFYVSGTSAKYGPYRAFFPFYGDTYERFWRDEYHFVLFPLYG HHHHHHCCCCHHHCEEEEEEEEECCCCCCCCCEEECCCCCCHHHHHHCCCCCEEEEEECC SAVKKGTTTKHYLWPIFSSTKGDKEDGFEVFPLYGQSQKEGVYQKRFVLWPFYLSEKSGL HHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHEEEEEEEEECCCCCC DTDNPTQKKTFFPLYASTDSPMMTSRTYLWPFFGYTENREKKYEEVNYLWPLVGTVRGEN CCCCCCCCCEEEEEEECCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCC RSKDSYLPFYSHETRPEWEKSWYFWPIYKHEEIKSDIFRQEIDRVLFFLYRSNHEYWPKD CCCCCCCCCCCCCCCCCHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GQDRQRTAVWPLFLYKRTTDGVSSVSLPAPVESILDKEGIEKNWAPLWRIYQRRWDQAGN CCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC SASTLFWNLYWHERRGDELAYELFPLISYRNTKSERELKLLKGLISLKRNGEEEDLSLLW CCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE LPFGLKWGHK EECCCCCCCC >Mature Secondary Structure PVLRKFITASLLMLAFAGSSSAGEGDGAVERGKGTIFTLWPLVDYRESPAEGFSNLSLL CHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCHHHHCCHHHH GPIVKYQKKGEDTDFAIRPFFYTSSHTTEKSDSTYYLYPLAYHESTPESDTSTALQLFRK HHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH TTYRKQEGAEQEKSTMLFPFYVSGTSAKYGPYRAFFPFYGDTYERFWRDEYHFVLFPLYG HHHHHHCCCCHHHCEEEEEEEEECCCCCCCCCEEECCCCCCHHHHHHCCCCCEEEEEECC SAVKKGTTTKHYLWPIFSSTKGDKEDGFEVFPLYGQSQKEGVYQKRFVLWPFYLSEKSGL HHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHEEEEEEEEECCCCCC DTDNPTQKKTFFPLYASTDSPMMTSRTYLWPFFGYTENREKKYEEVNYLWPLVGTVRGEN CCCCCCCCCEEEEEEECCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCC RSKDSYLPFYSHETRPEWEKSWYFWPIYKHEEIKSDIFRQEIDRVLFFLYRSNHEYWPKD CCCCCCCCCCCCCCCCCHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GQDRQRTAVWPLFLYKRTTDGVSSVSLPAPVESILDKEGIEKNWAPLWRIYQRRWDQAGN CCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC SASTLFWNLYWHERRGDELAYELFPLISYRNTKSERELKLLKGLISLKRNGEEEDLSLLW CCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE LPFGLKWGHK EECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA