Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 197119080

GI number: 197119080

Start: 3124265

End: 3124957

Strand: Reverse

Name: yggS [C]

Synonym: Gbem_2707

Alternate gene names: 197119080

Gene position: 3124957-3124265 (Counterclockwise)

Preceding gene: 197119081

Following gene: 197119079

Centisome position: 67.71

GC content: 64.21

Gene sequence:

>693_bases
ATGTCGGTAGCTGAGAACCTGGGGAAAATCAGGGAGCGAATCAGGCAGGCGGCGCTCAGGGCCGGGAGGGAACCGGATGC
GGTCCGGCTGGTCGCGGTCTCCAAGACCAAGCCTGCCGCGGCGATCGAGGAAGCTTTCGCCTGCGGGCAGCAGATCTTCG
GCGAGAACTACGTGCAGGAGCTGGTGGGGAAAAAGGGCGAGCTGCCGCCGGAGATTTCCTGGCACTTCATCGGCAACCTG
CAGAGCAACAAGGTGCGCCAGATAGCGGGGATGGTCGACCTGATCCACTCGGTGGACCGCCTGTCGCTCGCCGCCGAAAT
CGACCGCCAGTGGGGGGCCTTGGGAAAGGTCTGCGAGGTGCTGATCCAGGTCAACATCTCCCAAGAGGAGACCAAGGGGG
GGACCAGCAGCGATGAGCTGTTCCAACTGGTGCGCGACGTGGCCAAGCTCTCCAACCTGCGCGTCGTGGGGCTCATGACC
ATGCCCCCCTTCTTCGACGACCCCGAGGGGGCGCGCCCCTATTTCCGGGAACTAAGAGAGCTGGCCCGGAAGCTGGAGGC
TGCCGCCATACCTGGCGTCTCGATGCTTGAACTGTCGATGGGAATGTCGGGCGATTTCGAGGCCGCCATAGAAGAGGGGG
CGACTCTGGTGCGCGTAGGCTCGGCGCTGTTCGGGGAGAGGGAATACCGCTAG

Upstream 100 bases:

>100_bases
GAAGATAGAGGGCTCTTACACCAACGTGGTCGGCCTGCCGCTTTGCGAGGTGGTGGACGCGCTGAGGGTGATAGGGGCCC
TGGGGAACTAGGGAGGGTGC

Downstream 100 bases:

>100_bases
GGGACTGGCTCCGCCAGGTGCCCTCCCCCTGCCCACAGGGGACTGGCTCCGCCAGGTGCCTGTCCCCCTTGCCCCTCTGC
CCAAAAAAGGAGGTTCTGTT

Product: pyridoxal phosphate-dependent enzyme, class III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQELVGKKGELPPEISWHFIGNL
QSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVCEVLIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMT
MPPFFDDPEGARPYFRELRELARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR

Sequences:

>Translated_230_residues
MSVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQELVGKKGELPPEISWHFIGNL
QSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVCEVLIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMT
MPPFFDDPEGARPYFRELRELARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR
>Mature_229_residues
SVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQELVGKKGELPPEISWHFIGNLQ
SNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVCEVLIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMTM
PPFFDDPEGARPYFRELRELARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=240, Percent_Identity=43.3333333333333, Blast_Score=168, Evalue=4e-42,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=45.7627118644068, Blast_Score=179, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17533025, Length=223, Percent_Identity=40.8071748878924, Blast_Score=137, Evalue=5e-33,
Organism=Saccharomyces cerevisiae, GI6319435, Length=230, Percent_Identity=33.9130434782609, Blast_Score=119, Evalue=5e-28,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=42.2131147540984, Blast_Score=157, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25271; Mature: 25140

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LVGKKGELPPEISWHFIGNLQSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVCEV
HHCCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMTMPPFFDDPEGARPYFRELRE
HHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHH
LARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR
HHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LVGKKGELPPEISWHFIGNLQSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVCEV
HHCCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMTMPPFFDDPEGARPYFRELRE
HHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHH
LARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR
HHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]