| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119051
Identifier: 197119051
GI number: 197119051
Start: 3097892
End: 3099130
Strand: Direct
Name: 197119051
Synonym: Gbem_2674
Alternate gene names: NA
Gene position: 3097892-3099130 (Clockwise)
Preceding gene: 197119050
Following gene: 197119052
Centisome position: 67.12
GC content: 63.03
Gene sequence:
>1239_bases ATGAGAAAAACTGTCGCAGCAAGCATCAAAACCGGAATGGCGCTCTTACTGGCAAGCACGGCCACTGCCGCCATCGCCTT CGCGGAACCGACGACCTACCCCGAGGGGACCGCCACTCCCTCGCAAACCTGCGGGGCGTGCCACAAGGCAATCTACCGCG AATTCGCCTTCGGCTTTGGCGGTGATATCCACTACAAGCCGACCACCATTCCGCAGAAGGAAGGGGAGGCGATTCCCATG CCGGCCGGGGTCTCGGCCACGGCGACCGCCCACGCCTTCGCCGGCACCGAGCAGTACCCGATCCACGCCCGCGAGGCGGA GGAGGACGGGAAATCGTGCAATGTCTGCCATTACCCCGAGCCATTTGCCGTTCCGGACATCAACGTTGCCGAGATGACCA AGCCGAAGGGGCGCCCCAAGGCCACCGAAGCGGCGGGGATCACCTGCGCCAGTTGCCACCTGACTCCCGAAGGGAAGATC AGGGGGCCCCATAGCGTCAACGCTCCGCACGAGACCGTGGCCGACCCCGCGATTCAAACCTCGGCCATGTGCGCCTACTG CCACAGCATGGGGAAACGGGTAGTCGGAAAGCAGACCCAGACCTTCCTGGAGTGGCGCGAGGATTTCAACAAGCCGGGCC TGGGCAAGCAGCAGTGCCAGGACTGCCACATGCCGCGCACCATGCGCAAGGTGGCTGAGGACTTCAACAATCCCGAGCGT GCGGTGGCGCGCCACCTGTGGACCGGCGGACGCTCGCAGCAGAGGCTTGCCAGCGCTCTGAGCATGGCGATCAGCCAGCC TGACGCCGACAAGCCGGCCATCACCCTCCACGTTATCAACGTGGGCGCGGGTCACTCGGTGCCGACCGGTTCCAACCGCA GAGCGATCTACCTCAACGTGGTGGTGACCGACAAGAAAGGCAAAGCGGTCGCGAACAAAGAGTGGATGTTCGCCCCCTCC TACGGCAATCGCCCGGATGACAGGAAGTTCCTTGAGGAAGACAAGAAGCGTCCTGATGCCGTCGCCGCGAGCCAGGCAGA TGCTCAGGGGCCGCACGAGGCAAACATCAGGGCCGGCGAGGAGCGTATTCTCCCTTGGGCGCCGGAGCTGAAGCCCGGCG AGTACACGGTGAAAGCCCGTCTCATCTACGACCTGAACCGCTACAACGCCCGCTCTTTCAATGAAGACCAGACGGAGATC AACAGCACGACCCTCACCATCAAAGTAAAAAAAGGATGA
Upstream 100 bases:
>100_bases GCCTGGCAAGGGGAGCATCTTCAGAATCGTACTCCCGGTCCGGGAATCTTAACCATTGGTGCAGCATGATCAACAGCAAT ACGACAAAAGGAGGAATTTG
Downstream 100 bases:
>100_bases TCAAGCTACGGGGCCTGGGCGAACCAGGCCCCGTTCATTTTCAAGGCAACAGCCGGCACTCTCCAGGAGTAGCGTATGAA CCGTAACAAGACCCGATTTC
Product: cytochrome c
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MRKTVAASIKTGMALLLASTATAAIAFAEPTTYPEGTATPSQTCGACHKAIYREFAFGFGGDIHYKPTTIPQKEGEAIPM PAGVSATATAHAFAGTEQYPIHAREAEEDGKSCNVCHYPEPFAVPDINVAEMTKPKGRPKATEAAGITCASCHLTPEGKI RGPHSVNAPHETVADPAIQTSAMCAYCHSMGKRVVGKQTQTFLEWREDFNKPGLGKQQCQDCHMPRTMRKVAEDFNNPER AVARHLWTGGRSQQRLASALSMAISQPDADKPAITLHVINVGAGHSVPTGSNRRAIYLNVVVTDKKGKAVANKEWMFAPS YGNRPDDRKFLEEDKKRPDAVAASQADAQGPHEANIRAGEERILPWAPELKPGEYTVKARLIYDLNRYNARSFNEDQTEI NSTTLTIKVKKG
Sequences:
>Translated_412_residues MRKTVAASIKTGMALLLASTATAAIAFAEPTTYPEGTATPSQTCGACHKAIYREFAFGFGGDIHYKPTTIPQKEGEAIPM PAGVSATATAHAFAGTEQYPIHAREAEEDGKSCNVCHYPEPFAVPDINVAEMTKPKGRPKATEAAGITCASCHLTPEGKI RGPHSVNAPHETVADPAIQTSAMCAYCHSMGKRVVGKQTQTFLEWREDFNKPGLGKQQCQDCHMPRTMRKVAEDFNNPER AVARHLWTGGRSQQRLASALSMAISQPDADKPAITLHVINVGAGHSVPTGSNRRAIYLNVVVTDKKGKAVANKEWMFAPS YGNRPDDRKFLEEDKKRPDAVAASQADAQGPHEANIRAGEERILPWAPELKPGEYTVKARLIYDLNRYNARSFNEDQTEI NSTTLTIKVKKG >Mature_412_residues MRKTVAASIKTGMALLLASTATAAIAFAEPTTYPEGTATPSQTCGACHKAIYREFAFGFGGDIHYKPTTIPQKEGEAIPM PAGVSATATAHAFAGTEQYPIHAREAEEDGKSCNVCHYPEPFAVPDINVAEMTKPKGRPKATEAAGITCASCHLTPEGKI RGPHSVNAPHETVADPAIQTSAMCAYCHSMGKRVVGKQTQTFLEWREDFNKPGLGKQQCQDCHMPRTMRKVAEDFNNPER AVARHLWTGGRSQQRLASALSMAISQPDADKPAITLHVINVGAGHSVPTGSNRRAIYLNVVVTDKKGKAVANKEWMFAPS YGNRPDDRKFLEEDKKRPDAVAASQADAQGPHEANIRAGEERILPWAPELKPGEYTVKARLIYDLNRYNARSFNEDQTEI NSTTLTIKVKKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44795; Mature: 44795
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKTVAASIKTGMALLLASTATAAIAFAEPTTYPEGTATPSQTCGACHKAIYREFAFGFG CCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC GDIHYKPTTIPQKEGEAIPMPAGVSATATAHAFAGTEQYPIHAREAEEDGKSCNVCHYPE CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC PFAVPDINVAEMTKPKGRPKATEAAGITCASCHLTPEGKIRGPHSVNAPHETVADPAIQT CCCCCCCCHHHCCCCCCCCCCCHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHH SAMCAYCHSMGKRVVGKQTQTFLEWREDFNKPGLGKQQCQDCHMPRTMRKVAEDFNNPER HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHH AVARHLWTGGRSQQRLASALSMAISQPDADKPAITLHVINVGAGHSVPTGSNRRAIYLNV HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE VVTDKKGKAVANKEWMFAPSYGNRPDDRKFLEEDKKRPDAVAASQADAQGPHEANIRAGE EEECCCCCEECCCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC ERILPWAPELKPGEYTVKARLIYDLNRYNARSFNEDQTEINSTTLTIKVKKG CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHCCCCEEEEEEEECC >Mature Secondary Structure MRKTVAASIKTGMALLLASTATAAIAFAEPTTYPEGTATPSQTCGACHKAIYREFAFGFG CCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC GDIHYKPTTIPQKEGEAIPMPAGVSATATAHAFAGTEQYPIHAREAEEDGKSCNVCHYPE CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC PFAVPDINVAEMTKPKGRPKATEAAGITCASCHLTPEGKIRGPHSVNAPHETVADPAIQT CCCCCCCCHHHCCCCCCCCCCCHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHH SAMCAYCHSMGKRVVGKQTQTFLEWREDFNKPGLGKQQCQDCHMPRTMRKVAEDFNNPER HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHH AVARHLWTGGRSQQRLASALSMAISQPDADKPAITLHVINVGAGHSVPTGSNRRAIYLNV HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEE VVTDKKGKAVANKEWMFAPSYGNRPDDRKFLEEDKKRPDAVAASQADAQGPHEANIRAGE EEECCCCCEECCCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCC ERILPWAPELKPGEYTVKARLIYDLNRYNARSFNEDQTEINSTTLTIKVKKG CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA