| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119023
Identifier: 197119023
GI number: 197119023
Start: 3063968
End: 3065524
Strand: Direct
Name: 197119023
Synonym: Gbem_2646
Alternate gene names: NA
Gene position: 3063968-3065524 (Clockwise)
Preceding gene: 197119008
Following gene: 197119024
Centisome position: 66.39
GC content: 63.78
Gene sequence:
>1557_bases ATGGTTCGAAAGCTTATAAAATCGCTACTTGAAGCAAAGGCTTACCCCGAGCCCACGGCCGGGGTGCGCCTCATCGAGAC CCACGTTTCATTCATCTTCGTTACCGACTCCTTCGTATACAAGGTCAAAAAGTCCGTCGATTACGGTTTTCTCGACTTCA CCACGCTGGAGCGCCGGCGCTTTTACTGCGAGGAAGAGGTGCGGTTGAACCGGCGCCTCTGCCCGGACCTCTACCTGGGG GTGGTGGAACTGCGGCGCAATTCCCAAGGAGCGTCCTTTGCCGGCGGGGGCGAGCTCCTTGACTACGCGGTGAAGATGAA ACGGCTCCCCGAAGAGCGGATGCTGGTGCACCTTCTGGAACGGGGGGAAGCGGGCGTCGCCGACATGGACCGGATCGCCC GGGTGGTGGCCGATTTCCATGCCAAGGCATTACGCAGCGCACAGATAGACGCCTGCGGCCAAACCGCCGTCATCCGCCGC AACTGGGAGGAGAACTTCCGGCAGGCGGCACCATTCGCGGGGGTGACCATATCCGCCTGCGAACTTGCGGACATACGGCG CTGGGCCGAGCGGTTCCTGGAGCAAAACGAGGAGCAATTCCGTCTGCGGGTGGCCAAAGGGTACATCAGGGAGTGCGACG GCGACCTCCACTCCGGCAACATCTGCCTCACCGACAAAGTCTGCATCTTCGACTGCATCGAGTTCAACGAGCGGTTTCGC TACATAGACACCGCGGCGGACCTCTCGTTCCTGCTGATGGACCTGGAGTACGCCGGGCGCCCGGACCTGTCGGAGGCGCT CCTGTCGGCCTACCAAAAGGCCGCTGGGGATCGGGAAATAGGGAACCTGCTTCCGTTCTACAAGACCTACCGTGCCTTCG TGCGCGGCAAGGTGACCAGCTTTCTGCTGAACGACCCCGACTTACCCTCCACGGAACTTGCCGTCAAAAGGGAGACGGCC CGGCGTTATTTCCGCCTGGCCCGCGGCTATACGCTGAGGGACCGGCTCAAACCTTCCCTGGTGATCACCTGCGGCCTCAT GGGAAGCGGCAAGAGCACCCTGGCCCGGGAACTCGCCCTGGAACTCGGGTTCCAGTTGCGGCGCTCGGACGTGCTGCGCA AGGAAGTAGCCGGCCTTCCGCTGCAGCCGGTGGCGGAAGAGTACCGGGGGGGCATCTACAATGCCGATATGGACCGCGCC ACTTACGCAGCTCTTTTAGCCGAGGCCGAAGAGGCGCTCAAGGCGGGCAAGGGGGTGGTGGCCGACGCCACATTCCGCCG CGCCGCCGACCGGGAGGCCTTCCGGGCCTTGGCCGCGCAGCTTGGCGTTCCCTGCTACACGGTCGAGACCCGCTGCCCCG AACTTATAATCCGGCAGCGGCTGGAGGCGCGCCGCGGCGACGCAAGCGAAGTCTCAGACGCCAGGTGGGAGCACTTCCAC CGGCAACAGGCGGAGTTCGAGGCGCCGCAAGCGGGAGAGTCCATCCCGGTCGACTCCACCCTCCCCCTCTCCACCGAGGC TGACCTGGTGTTGCGCGCAATGGGGTTACTGCCATGA
Upstream 100 bases:
>100_bases GTAAAAGCGTCAAACAACAATTGCTGTATTTTATGCTATTGCGCCTGAAATGCTCTATGATAGTATTCTGTAGTCAAATC ATCGGTTTAACGGCAAAAGC
Downstream 100 bases:
>100_bases AGACGACCATCAGGGAGCTGCTCGTTAAAAGGCTCAAGCTGAAGGACACCTGGGTGATCTGCTTCGTCCTCGGCATGATC ATGATGAACTACCCGTTCAT
Product: kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MVRKLIKSLLEAKAYPEPTAGVRLIETHVSFIFVTDSFVYKVKKSVDYGFLDFTTLERRRFYCEEEVRLNRRLCPDLYLG VVELRRNSQGASFAGGGELLDYAVKMKRLPEERMLVHLLERGEAGVADMDRIARVVADFHAKALRSAQIDACGQTAVIRR NWEENFRQAAPFAGVTISACELADIRRWAERFLEQNEEQFRLRVAKGYIRECDGDLHSGNICLTDKVCIFDCIEFNERFR YIDTAADLSFLLMDLEYAGRPDLSEALLSAYQKAAGDREIGNLLPFYKTYRAFVRGKVTSFLLNDPDLPSTELAVKRETA RRYFRLARGYTLRDRLKPSLVITCGLMGSGKSTLARELALELGFQLRRSDVLRKEVAGLPLQPVAEEYRGGIYNADMDRA TYAALLAEAEEALKAGKGVVADATFRRAADREAFRALAAQLGVPCYTVETRCPELIIRQRLEARRGDASEVSDARWEHFH RQQAEFEAPQAGESIPVDSTLPLSTEADLVLRAMGLLP
Sequences:
>Translated_518_residues MVRKLIKSLLEAKAYPEPTAGVRLIETHVSFIFVTDSFVYKVKKSVDYGFLDFTTLERRRFYCEEEVRLNRRLCPDLYLG VVELRRNSQGASFAGGGELLDYAVKMKRLPEERMLVHLLERGEAGVADMDRIARVVADFHAKALRSAQIDACGQTAVIRR NWEENFRQAAPFAGVTISACELADIRRWAERFLEQNEEQFRLRVAKGYIRECDGDLHSGNICLTDKVCIFDCIEFNERFR YIDTAADLSFLLMDLEYAGRPDLSEALLSAYQKAAGDREIGNLLPFYKTYRAFVRGKVTSFLLNDPDLPSTELAVKRETA RRYFRLARGYTLRDRLKPSLVITCGLMGSGKSTLARELALELGFQLRRSDVLRKEVAGLPLQPVAEEYRGGIYNADMDRA TYAALLAEAEEALKAGKGVVADATFRRAADREAFRALAAQLGVPCYTVETRCPELIIRQRLEARRGDASEVSDARWEHFH RQQAEFEAPQAGESIPVDSTLPLSTEADLVLRAMGLLP >Mature_518_residues MVRKLIKSLLEAKAYPEPTAGVRLIETHVSFIFVTDSFVYKVKKSVDYGFLDFTTLERRRFYCEEEVRLNRRLCPDLYLG VVELRRNSQGASFAGGGELLDYAVKMKRLPEERMLVHLLERGEAGVADMDRIARVVADFHAKALRSAQIDACGQTAVIRR NWEENFRQAAPFAGVTISACELADIRRWAERFLEQNEEQFRLRVAKGYIRECDGDLHSGNICLTDKVCIFDCIEFNERFR YIDTAADLSFLLMDLEYAGRPDLSEALLSAYQKAAGDREIGNLLPFYKTYRAFVRGKVTSFLLNDPDLPSTELAVKRETA RRYFRLARGYTLRDRLKPSLVITCGLMGSGKSTLARELALELGFQLRRSDVLRKEVAGLPLQPVAEEYRGGIYNADMDRA TYAALLAEAEEALKAGKGVVADATFRRAADREAFRALAAQLGVPCYTVETRCPELIIRQRLEARRGDASEVSDARWEHFH RQQAEFEAPQAGESIPVDSTLPLSTEADLVLRAMGLLP
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 58527; Mature: 58527
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRKLIKSLLEAKAYPEPTAGVRLIETHVSFIFVTDSFVYKVKKSVDYGFLDFTTLERRR CHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEHHHHHHHHHHCCCCCEEHHHHHHHH FYCEEEVRLNRRLCPDLYLGVVELRRNSQGASFAGGGELLDYAVKMKRLPEERMLVHLLE HHCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH RGEAGVADMDRIARVVADFHAKALRSAQIDACGQTAVIRRNWEENFRQAAPFAGVTISAC CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCCCCCEEHHH ELADIRRWAERFLEQNEEQFRLRVAKGYIRECDGDLHSGNICLTDKVCIFDCIEFNERFR HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHH YIDTAADLSFLLMDLEYAGRPDLSEALLSAYQKAAGDREIGNLLPFYKTYRAFVRGKVTS HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH FLLNDPDLPSTELAVKRETARRYFRLARGYTLRDRLKPSLVITCGLMGSGKSTLARELAL HEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHH ELGFQLRRSDVLRKEVAGLPLQPVAEEYRGGIYNADMDRATYAALLAEAEEALKAGKGVV HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE ADATFRRAADREAFRALAAQLGVPCYTVETRCPELIIRQRLEARRGDASEVSDARWEHFH EHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH RQQAEFEAPQAGESIPVDSTLPLSTEADLVLRAMGLLP HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MVRKLIKSLLEAKAYPEPTAGVRLIETHVSFIFVTDSFVYKVKKSVDYGFLDFTTLERRR CHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEHHHHHHHHHHCCCCCEEHHHHHHHH FYCEEEVRLNRRLCPDLYLGVVELRRNSQGASFAGGGELLDYAVKMKRLPEERMLVHLLE HHCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH RGEAGVADMDRIARVVADFHAKALRSAQIDACGQTAVIRRNWEENFRQAAPFAGVTISAC CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCCCCCEEHHH ELADIRRWAERFLEQNEEQFRLRVAKGYIRECDGDLHSGNICLTDKVCIFDCIEFNERFR HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHH YIDTAADLSFLLMDLEYAGRPDLSEALLSAYQKAAGDREIGNLLPFYKTYRAFVRGKVTS HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH FLLNDPDLPSTELAVKRETARRYFRLARGYTLRDRLKPSLVITCGLMGSGKSTLARELAL HEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHH ELGFQLRRSDVLRKEVAGLPLQPVAEEYRGGIYNADMDRATYAALLAEAEEALKAGKGVV HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE ADATFRRAADREAFRALAAQLGVPCYTVETRCPELIIRQRLEARRGDASEVSDARWEHFH EHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH RQQAEFEAPQAGESIPVDSTLPLSTEADLVLRAMGLLP HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]