Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197118891

Identifier: 197118891

GI number: 197118891

Start: 2913964

End: 2915067

Strand: Direct

Name: 197118891

Synonym: Gbem_2514

Alternate gene names: NA

Gene position: 2913964-2915067 (Clockwise)

Preceding gene: 197118889

Following gene: 197118893

Centisome position: 63.14

GC content: 60.69

Gene sequence:

>1104_bases
ATGGATCAAAAATATGACGTACTGATAGTAGGAGGCGGCCCCGGCGGAGTCGCCGCCGCCTACATCTGCCATAAGCTTGG
CCTCTCCCACCTGCTGATTGAATCGGGCAAGGCTATCTTCCAGGGCATTGCCAATACCTACCCGGAAGGAAAGAACGTTT
ACCCCTCCAAGCCCAAGGAGAACCCCGAGCCCTTCCTGGTAGAGGAACTGCGCCCGCCCGACAAACCGGTGACGGTGGAG
AAATACATCCAGTACGTGCAGCACTTCGTGCAGCACGAAGGGCTGAACGTACTCACCGACACCCAGTTCGAGAACATCGA
AGACGGCAGGGAGTACCTCAAGGTACTCACCTCCCGGGGGACTTTCCAGGCCAAAAGGGTCCTGCTCGCCTTCGGCAGTT
CCATTCCGAAGGAGCTCTCCGTGTACGGAGACGCGAAGATGGTCGCCAAGGGGCTGGACGACCCGAAGAAATACATAGGG
GTGCGCACGCTTGTCATCGGCGGCGGCAACAGCGCGGCCGACGTCATCATCTCCATCCTCAAGGAAAAGCGCAACGCCAA
CGACACCGAACCGGTGTACTGGGCGCACGTTGCGGAGACCTTCGACGTGAACAAGGAGACAGCGCAAAGGCTGGGCGAGG
AGATCCTCCTCGGGGGAAACATCCGGCTTTTGCCCGGCGCCACCCCGAGGATCGGCGAGGTCGACGACGAAGGTGTGGAC
CGACTGGTGATCCGGGTAAGCGAGGACAAGATCCCCGGCGGGATCGAGCGCTACCACGCCATGAGCTTTCCCATGAAGAA
CGTGATCGCCTGCATCGGCAGCCAGGGCCCCACCTCCATCTACGACCGGATCGGCGTGCAAACCATAGCCTGCGCCGAGG
GGGTCTGCCAGGTAGCCAAGGAAGGGGACCGGCTGCTCCTCTTAACCTCCGACTTCGAGTCGACCCGCAAAGGGGTCTAC
GTGATCGGTGGCGCCATCTCCCCCTCCTACATGCGGATCAACAAGGGGGCCATCCAGGAGGAGCGGCACCCGAACCTGAT
CTACACCGCTGTGAACGACGCCCATCACGTCATCGACGCCATAGCCGCGAAGCTCAAAAAATAG

Upstream 100 bases:

>100_bases
TGCCAAGGCCCTGTTCTCATTATTACTTTGAAGCAGAAGACTGTGCGTGTATAGTTAACACGTTACGCTCACTACAAATA
CGCATCACCAGAGGTAGATC

Downstream 100 bases:

>100_bases
CAGTTCAGCTGGGAAATAACCGCCGTGCCCACTCGGCCTATCGCCGCTCTCCTCCCCCTGGAGGGGGGAGGTCGGGAGGG
GGGAAAGGGGGCGCCCCCTC

Product: FAD-dependent oxidoreductase

Products: NA

Alternate protein names: FAD-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase; FAD-Dependent Oxidoreductase

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDQKYDVLIVGGGPGGVAAAYICHKLGLSHLLIESGKAIFQGIANTYPEGKNVYPSKPKENPEPFLVEELRPPDKPVTVE
KYIQYVQHFVQHEGLNVLTDTQFENIEDGREYLKVLTSRGTFQAKRVLLAFGSSIPKELSVYGDAKMVAKGLDDPKKYIG
VRTLVIGGGNSAADVIISILKEKRNANDTEPVYWAHVAETFDVNKETAQRLGEEILLGGNIRLLPGATPRIGEVDDEGVD
RLVIRVSEDKIPGGIERYHAMSFPMKNVIACIGSQGPTSIYDRIGVQTIACAEGVCQVAKEGDRLLLLTSDFESTRKGVY
VIGGAISPSYMRINKGAIQEERHPNLIYTAVNDAHHVIDAIAAKLKK

Sequences:

>Translated_367_residues
MDQKYDVLIVGGGPGGVAAAYICHKLGLSHLLIESGKAIFQGIANTYPEGKNVYPSKPKENPEPFLVEELRPPDKPVTVE
KYIQYVQHFVQHEGLNVLTDTQFENIEDGREYLKVLTSRGTFQAKRVLLAFGSSIPKELSVYGDAKMVAKGLDDPKKYIG
VRTLVIGGGNSAADVIISILKEKRNANDTEPVYWAHVAETFDVNKETAQRLGEEILLGGNIRLLPGATPRIGEVDDEGVD
RLVIRVSEDKIPGGIERYHAMSFPMKNVIACIGSQGPTSIYDRIGVQTIACAEGVCQVAKEGDRLLLLTSDFESTRKGVY
VIGGAISPSYMRINKGAIQEERHPNLIYTAVNDAHHVIDAIAAKLKK
>Mature_367_residues
MDQKYDVLIVGGGPGGVAAAYICHKLGLSHLLIESGKAIFQGIANTYPEGKNVYPSKPKENPEPFLVEELRPPDKPVTVE
KYIQYVQHFVQHEGLNVLTDTQFENIEDGREYLKVLTSRGTFQAKRVLLAFGSSIPKELSVYGDAKMVAKGLDDPKKYIG
VRTLVIGGGNSAADVIISILKEKRNANDTEPVYWAHVAETFDVNKETAQRLGEEILLGGNIRLLPGATPRIGEVDDEGVD
RLVIRVSEDKIPGGIERYHAMSFPMKNVIACIGSQGPTSIYDRIGVQTIACAEGVCQVAKEGDRLLLLTSDFESTRKGVY
VIGGAISPSYMRINKGAIQEERHPNLIYTAVNDAHHVIDAIAAKLKK

Specific function: Unknown

COG id: COG0492

COG function: function code O; Thioredoxin reductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40139; Mature: 40139

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQKYDVLIVGGGPGGVAAAYICHKLGLSHLLIESGKAIFQGIANTYPEGKNVYPSKPKE
CCCCEEEEEEECCCHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
NPEPFLVEELRPPDKPVTVEKYIQYVQHFVQHEGLNVLTDTQFENIEDGREYLKVLTSRG
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC
TFQAKRVLLAFGSSIPKELSVYGDAKMVAKGLDDPKKYIGVRTLVIGGGNSAADVIISIL
CHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCHHHHHCEEEEEEECCCHHHHHHHHHH
KEKRNANDTEPVYWAHVAETFDVNKETAQRLGEEILLGGNIRLLPGATPRIGEVDDEGVD
HHHCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHEEECCCEEECCCCCCCCCCCCCCCCC
RLVIRVSEDKIPGGIERYHAMSFPMKNVIACIGSQGPTSIYDRIGVQTIACAEGVCQVAK
EEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHC
EGDRLLLLTSDFESTRKGVYVIGGAISPSYMRINKGAIQEERHPNLIYTAVNDAHHVIDA
CCCEEEEEECCCHHHCCCEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCHHHHHHHH
IAAKLKK
HHHHHCC
>Mature Secondary Structure
MDQKYDVLIVGGGPGGVAAAYICHKLGLSHLLIESGKAIFQGIANTYPEGKNVYPSKPKE
CCCCEEEEEEECCCHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
NPEPFLVEELRPPDKPVTVEKYIQYVQHFVQHEGLNVLTDTQFENIEDGREYLKVLTSRG
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC
TFQAKRVLLAFGSSIPKELSVYGDAKMVAKGLDDPKKYIGVRTLVIGGGNSAADVIISIL
CHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCHHHHHCEEEEEEECCCHHHHHHHHHH
KEKRNANDTEPVYWAHVAETFDVNKETAQRLGEEILLGGNIRLLPGATPRIGEVDDEGVD
HHHCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHEEECCCEEECCCCCCCCCCCCCCCCC
RLVIRVSEDKIPGGIERYHAMSFPMKNVIACIGSQGPTSIYDRIGVQTIACAEGVCQVAK
EEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHC
EGDRLLLLTSDFESTRKGVYVIGGAISPSYMRINKGAIQEERHPNLIYTAVNDAHHVIDA
CCCEEEEEECCCHHHCCCEEEEECCCCCCCEEECCCCCCCCCCCCEEEEECCHHHHHHHH
IAAKLKK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA