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The map label for this gene is yebA [H]

Identifier: 197118757

GI number: 197118757

Start: 2754099

End: 2754659

Strand: Reverse

Name: yebA [H]

Synonym: Gbem_2376

Alternate gene names: 197118757

Gene position: 2754659-2754099 (Counterclockwise)

Preceding gene: 197118759

Following gene: 197118756

Centisome position: 59.69

GC content: 60.78

Gene sequence:

>561_bases
ATGAGGGTTTTGCCGATAGCCGCATTCGTTCTTTGCACTTTCCCCGCCGTCGCCCTGGCCGACCTCGCCCTGCCCGTGGA
CGGGGTCGTGACCTCAGGAGTTGGTTGGCGGGTCGATCCCTTTGGCAGCGGCAAGCTCGCTTTTCATCGCGGCATCGACA
TCGCAGTCCCCGTTGGCACCCCGGTCCGGGCTACCCGCAAGGGAAGGGTCGTCTTCGCAGGAGAGCGTCGCGGTTACGGC
GCCACCGTCGTCGTCGAGCACGGCAACGGTGACAGAACCCTCTATGGCCACAATGTCTCAGTCAAGGTGAGCGCCGGCGA
GTTGGTGAAAGCAGGCGACGTATTGTCTTATTCTGGAAACACAGGTAGGTCCACGGGTCCTCATGTGCACTACGAATTGC
TCGCGAGCGGGCGTCCCTCAGTAGAAGAAGTCGCAGCTTTCGAAGTTGCGGAAGAAACGCCGGCCCCGACCGGCAGCCAG
CGTCGAGCGCTGGAACAAAAGATGGAAGAGTCCCTTGAGTTGCTCCTCACGACTATTAGGGGGAATCTAACAGGCGGTTG
A

Upstream 100 bases:

>100_bases
GCAGCTTGTCATTGCTGCTCCCTTCTGGGCACGGTACTTGATTAAGAGCTGTAACCGGTTTCGTTAGCGGAGCCGAAATT
ACGCCTCAGGAGCCGGTTGC

Downstream 100 bases:

>100_bases
CATGTTATCCGGCACATCCTGACCCTCCTCCAGGATGTGCCGACTTTTTCCCCGCTGACCCCCGTTGCCCCCCCGGCCGT
CGTAAAAACCCTTTCTTTCC

Product: peptidase M23 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRVLPIAAFVLCTFPAVALADLALPVDGVVTSGVGWRVDPFGSGKLAFHRGIDIAVPVGTPVRATRKGRVVFAGERRGYG
ATVVVEHGNGDRTLYGHNVSVKVSAGELVKAGDVLSYSGNTGRSTGPHVHYELLASGRPSVEEVAAFEVAEETPAPTGSQ
RRALEQKMEESLELLLTTIRGNLTGG

Sequences:

>Translated_186_residues
MRVLPIAAFVLCTFPAVALADLALPVDGVVTSGVGWRVDPFGSGKLAFHRGIDIAVPVGTPVRATRKGRVVFAGERRGYG
ATVVVEHGNGDRTLYGHNVSVKVSAGELVKAGDVLSYSGNTGRSTGPHVHYELLASGRPSVEEVAAFEVAEETPAPTGSQ
RRALEQKMEESLELLLTTIRGNLTGG
>Mature_186_residues
MRVLPIAAFVLCTFPAVALADLALPVDGVVTSGVGWRVDPFGSGKLAFHRGIDIAVPVGTPVRATRKGRVVFAGERRGYG
ATVVVEHGNGDRTLYGHNVSVKVSAGELVKAGDVLSYSGNTGRSTGPHVHYELLASGRPSVEEVAAFEVAEETPAPTGSQ
RRALEQKMEESLELLLTTIRGNLTGG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=134, Percent_Identity=40.2985074626866, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI87082297, Length=89, Percent_Identity=41.5730337078652, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082174, Length=132, Percent_Identity=30.3030303030303, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789099, Length=111, Percent_Identity=34.2342342342342, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 19518; Mature: 19518

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLPIAAFVLCTFPAVALADLALPVDGVVTSGVGWRVDPFGSGKLAFHRGIDIAVPVGT
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCCCCCCEEEECCCEEEEECCC
PVRATRKGRVVFAGERRGYGATVVVEHGNGDRTLYGHNVSVKVSAGELVKAGDVLSYSGN
CCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEECCCEEEEECCCCEEECCCEEEECCC
TGRSTGPHVHYELLASGRPSVEEVAAFEVAEETPAPTGSQRRALEQKMEESLELLLTTIR
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GNLTGG
CCCCCC
>Mature Secondary Structure
MRVLPIAAFVLCTFPAVALADLALPVDGVVTSGVGWRVDPFGSGKLAFHRGIDIAVPVGT
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCCCCCCEEEECCCEEEEECCC
PVRATRKGRVVFAGERRGYGATVVVEHGNGDRTLYGHNVSVKVSAGELVKAGDVLSYSGN
CCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEECCCEEEEECCCCEEECCCEEEECCC
TGRSTGPHVHYELLASGRPSVEEVAAFEVAEETPAPTGSQRRALEQKMEESLELLLTTIR
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GNLTGG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]